Wall clock time and date at job start Mon Mar 30 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47269 * 2 1 4 4 C 1.36487 * 119.97261 * 265.00103 * 3 2 1 5 5 C 1.38755 * 120.59926 * 179.72398 * 4 3 2 6 6 C 1.38853 * 120.51685 * 0.27504 * 5 4 3 7 7 N 1.40017 * 120.03689 * 179.97438 * 6 5 4 8 8 C 1.39049 * 119.92454 * 0.02562 * 6 5 4 9 9 O 1.35755 * 120.29681 * 180.02562 * 8 6 5 10 10 C 1.42901 * 116.99636 * 88.45100 * 9 8 6 11 11 C 1.40798 * 119.97159 * 85.27229 * 3 2 1 12 12 C 1.41194 * 120.25466 * 359.97438 * 11 3 2 13 13 H 1.07998 * 119.99934 * 320.85270 * 12 11 3 14 14 C 1.39918 * 119.99619 * 140.85385 * 12 11 3 15 15 N 1.30866 * 120.00136 * 339.89288 * 14 12 11 16 16 Si 1.86803 * 119.99824 * 159.89747 * 14 12 11 17 17 H 1.48497 * 109.46958 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47237 * 119.99716 * 16 14 12 19 19 H 1.48501 * 109.46746 * 239.99830 * 16 14 12 20 20 H 1.09001 * 109.47114 * 59.99231 * 1 2 3 21 21 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46631 * 300.00130 * 1 2 3 23 23 H 1.08998 * 109.46980 * 240.00525 * 2 1 3 24 24 H 1.09003 * 109.47105 * 120.00221 * 2 1 3 25 25 H 1.08002 * 119.70375 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.74362 * 180.29942 * 5 4 3 27 27 H 0.97001 * 119.99988 * 0.02562 * 7 6 5 28 28 H 0.96998 * 119.99654 * 180.02562 * 7 6 5 29 29 H 1.09009 * 109.46813 * 180.02562 * 10 9 8 30 30 H 1.08997 * 109.47554 * 300.00574 * 10 9 8 31 31 H 1.08998 * 109.46994 * 60.00850 * 10 9 8 32 32 H 0.97003 * 120.00358 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3568 2.0293 -1.1778 5 6 2.8152 3.3389 -1.1935 6 6 2.9569 4.0505 -0.0096 7 7 3.4208 5.3713 -0.0370 8 6 2.6385 3.4496 1.2033 9 8 2.7737 4.1385 2.3652 10 6 1.6516 4.9120 2.7950 11 6 2.1721 2.1174 1.2155 12 6 1.8426 1.4903 2.4369 13 1 0.9799 0.8434 2.4962 14 6 2.6339 1.7069 3.5703 15 7 3.8603 2.1441 3.4383 16 14 1.9398 1.3720 5.2719 17 1 0.5411 0.8886 5.1495 18 1 2.7639 0.3382 5.9480 19 1 1.9624 2.6236 6.0708 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.2521 1.4880 -2.1065 26 1 3.0634 3.8085 -2.1338 27 1 3.6431 5.7898 -0.8834 28 1 3.5199 5.8677 0.7904 29 1 1.8924 5.4109 3.7338 30 1 1.4135 5.6588 2.0376 31 1 0.7931 4.2565 2.9414 32 1 4.4091 2.2940 4.2240 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:24 Heat of formation + Delta-G solvation = -43.611665 kcal Electronic energy + Delta-G solvation = -15568.351584 eV Core-core repulsion = 13106.825669 eV Total energy + Delta-G solvation = -2461.525915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31681 -37.69082 -36.14679 -34.72729 -32.78047 -31.05099 -28.65794 -27.43483 -26.50333 -23.79325 -22.75581 -20.99835 -19.16855 -17.93777 -17.33280 -16.96441 -16.31593 -15.77411 -15.51926 -15.10079 -14.75525 -14.45554 -13.85625 -13.66794 -13.32430 -13.13113 -12.88460 -12.69474 -12.53660 -12.44877 -12.06360 -11.75785 -11.44873 -11.26284 -10.84561 -10.58078 -10.07853 -8.89115 -8.45519 -7.84854 -6.14571 1.08096 1.26055 1.41534 1.52728 1.54187 2.30901 2.91861 3.36866 3.48078 3.89175 4.43166 4.51498 4.57123 4.70643 4.73372 4.84802 4.86699 4.96407 5.12598 5.25660 5.28360 5.36705 5.45328 5.59420 5.66828 5.94221 6.10573 6.25629 6.40054 6.64702 6.89186 7.01285 7.16535 7.34033 7.63494 8.58578 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.015254 C = 0.010234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.124191 B = 1835.132686 C = 2735.412575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 C -0.224 4.224 4 C -0.067 4.067 5 C -0.298 4.298 6 C 0.198 3.802 7 N -0.875 5.875 8 C -0.068 4.068 9 O -0.308 6.308 10 C 0.030 3.970 11 C 0.112 3.888 12 C -0.497 4.497 13 H 0.072 0.928 14 C 0.063 3.937 15 N -0.794 5.794 16 Si 0.947 3.053 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.270 1.270 20 H 0.051 0.949 21 H 0.064 0.936 22 H 0.035 0.965 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.398 0.602 28 H 0.393 0.607 29 H 0.085 0.915 30 H 0.034 0.966 31 H 0.022 0.978 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 2.394 -2.611 4.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 C -0.226 4.226 4 C -0.086 4.086 5 C -0.322 4.322 6 C 0.094 3.906 7 N -0.417 5.417 8 C -0.117 4.117 9 O -0.223 6.223 10 C -0.066 4.066 11 C 0.109 3.891 12 C -0.526 4.526 13 H 0.090 0.910 14 C -0.155 4.155 15 N -0.418 5.418 16 Si 0.769 3.231 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.195 1.195 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.227 0.773 28 H 0.221 0.779 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.989 2.396 -2.382 4.511 hybrid contribution -0.138 0.397 0.807 0.909 sum -3.126 2.793 -1.576 4.478 Atomic orbital electron populations 1.21640 0.95449 1.01008 1.00798 1.20056 0.95669 0.92917 1.00334 1.19745 1.12612 0.97262 0.93027 1.20322 0.97311 0.94194 0.96727 1.20075 1.19815 0.97105 0.95161 1.18136 0.93632 0.85499 0.93326 1.42168 1.77005 1.11796 1.10758 1.18368 1.18029 0.91838 0.83511 1.86147 1.35327 1.62322 1.38529 1.22832 0.90736 0.93992 0.99007 1.17842 0.87666 0.90478 0.93161 1.19338 1.11648 1.27335 0.94328 0.90966 1.26230 0.93838 0.92389 1.03028 1.69839 1.07163 1.32214 1.32619 0.85710 0.79754 0.78588 0.78999 1.18447 1.19756 1.19468 0.93007 0.91726 0.94588 0.92062 0.93590 0.86548 0.86696 0.77302 0.77923 0.89667 0.94742 0.95967 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 9.83 71.98 0.71 -3.99 16 2 C -0.05 -2.15 5.45 29.85 0.16 -1.99 16 3 C -0.22 -10.69 5.16 -19.65 -0.10 -10.79 16 4 C -0.07 -2.91 9.58 21.98 0.21 -2.70 16 5 C -0.30 -12.85 9.89 22.54 0.22 -12.63 16 6 C 0.20 9.02 6.77 38.18 0.26 9.28 16 7 N -0.88 -31.93 9.09 -51.11 -0.46 -32.39 16 8 C -0.07 -3.52 5.23 23.18 0.12 -3.40 16 9 O -0.31 -15.30 6.63 -90.80 -0.60 -15.91 16 10 C 0.03 1.23 11.13 113.37 1.26 2.49 16 11 C 0.11 5.95 5.36 -21.21 -0.11 5.84 16 12 C -0.50 -26.59 7.61 23.40 0.18 -26.41 16 13 H 0.07 3.80 6.51 -2.91 -0.02 3.78 16 14 C 0.06 3.27 4.41 85.24 0.38 3.64 16 15 N -0.79 -43.29 11.30 21.82 0.25 -43.05 16 16 Si 0.95 39.75 29.60 68.60 2.03 41.79 16 17 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.03 1.40 7.13 -2.39 -0.02 1.39 16 23 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 24 H 0.05 2.05 7.24 -2.39 -0.02 2.03 16 25 H 0.12 4.30 8.05 -2.91 -0.02 4.28 16 26 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 27 H 0.40 11.81 8.85 -92.71 -0.82 10.99 16 28 H 0.39 13.96 8.20 -92.71 -0.76 13.20 16 29 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.28 14.06 8.30 -92.71 -0.77 13.29 16 Total: -1.00 -60.74 269.43 4.05 -56.69 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.44 Total: 33.52 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 3.28 Total: -40.65 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -0.22 Total: -75.44 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.60 Total: -15.91 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.79 kcal Total: -60.74 4.05 -56.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.077 kcal (2) G-P(sol) polarization free energy of solvation -60.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds