Wall clock time and date at job start Mon Mar 30 2020 02:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51888 * 121.19453 * 2 1 4 4 C 1.53895 * 107.28447 * 134.33740 * 3 2 1 5 5 H 1.09002 * 111.94748 * 182.18199 * 4 3 2 6 6 C 1.54463 * 108.46027 * 306.29555 * 4 3 2 7 7 C 1.54243 * 104.97306 * 90.44359 * 6 4 3 8 8 C 1.54867 * 104.93409 * 359.80682 * 7 6 4 9 9 H 1.08992 * 112.09547 * 145.70085 * 8 7 6 10 10 C 1.51537 * 121.03217 * 180.65312 * 2 1 3 11 11 N 1.48196 * 107.42396 * 58.77852 * 4 3 2 12 12 C 1.34772 * 127.84248 * 104.60490 * 11 4 3 13 13 O 1.21692 * 120.00040 * 359.97438 * 12 11 4 14 14 C 1.46377 * 120.00116 * 180.02562 * 12 11 4 15 15 H 1.08002 * 120.00081 * 6.49330 * 14 12 11 16 16 C 1.40045 * 120.00173 * 186.48881 * 14 12 11 17 17 N 1.30674 * 120.00338 * 184.72356 * 16 14 12 18 18 Si 1.86801 * 119.99978 * 4.72804 * 16 14 12 19 19 H 1.48496 * 109.47309 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.47151 * 59.99783 * 18 16 14 21 21 H 1.48500 * 109.47213 * 299.99635 * 18 16 14 22 22 H 1.08000 * 119.99603 * 179.35363 * 1 2 3 23 23 H 1.07998 * 120.00032 * 359.34712 * 1 2 3 24 24 H 1.08997 * 109.44690 * 15.25336 * 3 2 1 25 25 H 1.09002 * 110.62166 * 254.08836 * 3 2 1 26 26 H 1.09001 * 110.34093 * 209.31496 * 6 4 3 27 27 H 1.08997 * 110.34080 * 331.46074 * 6 4 3 28 28 H 1.08990 * 110.34365 * 118.87752 * 7 6 4 29 29 H 1.09003 * 110.33504 * 241.02422 * 7 6 4 30 30 H 1.08996 * 109.80691 * 105.84744 * 10 2 1 31 31 H 1.09004 * 109.80394 * 344.97574 * 10 2 1 32 32 H 0.97005 * 119.99713 * 354.91690 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0967 1.2993 0.0000 4 6 3.2120 1.1585 1.0510 5 1 3.8039 2.0693 1.1414 6 6 2.5691 0.7495 2.3946 7 6 2.5727 -0.7929 2.3850 8 6 3.2147 -1.1820 1.0305 9 1 3.8086 -2.0929 1.1049 10 6 2.0912 -1.2984 -0.0148 11 7 4.0411 -0.0075 0.6647 12 6 5.2662 -0.0012 0.1030 13 8 5.8167 1.0555 -0.1444 14 6 5.9342 -1.2654 -0.2105 15 1 5.4059 -2.1996 -0.0899 16 6 7.2582 -1.2634 -0.6668 17 7 7.8243 -2.3823 -1.0344 18 14 8.2151 0.3387 -0.7500 19 1 9.5832 0.0722 -1.2622 20 1 8.3027 0.9340 0.6077 21 1 7.5204 1.2836 -1.6609 22 1 -0.5399 -0.9353 -0.0106 23 1 -0.5400 0.9352 0.0107 24 1 1.4364 2.1233 0.2704 25 1 2.5348 1.4828 -0.9811 26 1 3.1627 1.1246 3.2284 27 1 1.5486 1.1273 2.4569 28 1 3.1679 -1.1756 3.2140 29 1 1.5533 -1.1744 2.4435 30 1 2.5216 -1.4593 -1.0032 31 1 1.4328 -2.1285 0.2416 32 1 7.3542 -3.2234 -0.9223 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598421883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:16 Heat of formation + Delta-G solvation = -34.950675 kcal Electronic energy + Delta-G solvation = -15619.137581 eV Core-core repulsion = 13157.987235 eV Total energy + Delta-G solvation = -2461.150346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07234 -36.81207 -33.66132 -32.90747 -31.28610 -30.52711 -27.24506 -25.94665 -24.12292 -21.84899 -20.20294 -19.63585 -18.05761 -16.82955 -15.91507 -15.14653 -14.60681 -14.07387 -13.97980 -13.57737 -13.15736 -12.79766 -12.58497 -12.48144 -12.18062 -11.89033 -11.55942 -11.37417 -10.80962 -10.57534 -10.34672 -10.20029 -10.11021 -10.03888 -9.14022 -8.97862 -8.92419 -7.93717 -7.59791 -6.99218 -4.91841 2.46527 3.58072 3.67094 3.99679 4.24717 4.31897 4.59709 4.87868 4.90099 5.16905 5.24845 5.33644 5.41656 5.53674 5.65273 5.70622 5.87148 5.98525 6.06679 6.09719 6.13254 6.16919 6.30288 6.43451 6.43939 6.49888 6.81348 7.03859 7.11146 7.70567 7.76101 8.17115 8.83777 9.09611 10.04174 10.33330 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041361 B = 0.009734 C = 0.009179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.810772 B = 2875.816328 C = 3049.561157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.091 4.091 3 C -0.097 4.097 4 C 0.135 3.865 5 H 0.092 0.908 6 C -0.125 4.125 7 C -0.128 4.128 8 C 0.145 3.855 9 H 0.097 0.903 10 C -0.099 4.099 11 N -0.628 5.628 12 C 0.573 3.427 13 O -0.616 6.616 14 C -0.591 4.591 15 H 0.072 0.928 16 C 0.060 3.940 17 N -0.833 5.833 18 Si 1.128 2.872 19 H -0.322 1.322 20 H -0.291 1.291 21 H -0.280 1.280 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 2.267 4.971 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.091 4.091 3 C -0.135 4.135 4 C 0.030 3.970 5 H 0.110 0.890 6 C -0.164 4.164 7 C -0.166 4.166 8 C 0.039 3.961 9 H 0.115 0.885 10 C -0.138 4.138 11 N -0.362 5.362 12 C 0.384 3.616 13 O -0.509 6.509 14 C -0.627 4.627 15 H 0.090 0.910 16 C -0.157 4.157 17 N -0.461 5.461 18 Si 0.961 3.039 19 H -0.253 1.253 20 H -0.219 1.219 21 H -0.207 1.207 22 H 0.112 0.888 23 H 0.111 0.889 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.911 3.355 4.337 12.212 hybrid contribution -1.842 -0.988 0.494 2.147 sum -12.753 2.367 4.831 13.841 Atomic orbital electron populations 1.23417 0.94747 1.01222 1.06313 1.22087 0.94627 0.96065 0.96287 1.21502 0.96997 0.94317 1.00718 1.21861 0.90671 0.92320 0.92137 0.89027 1.22478 1.00352 0.96033 0.97535 1.22589 1.00418 0.95936 0.97668 1.21960 0.90415 0.91674 0.92024 0.88539 1.21455 0.97079 0.94348 1.00878 1.48909 1.17178 1.04665 1.65406 1.18223 0.77343 0.90401 0.75618 1.90159 1.63972 1.34800 1.61937 1.22024 1.00209 0.92112 1.48388 0.91030 1.27147 0.95350 1.04865 0.88343 1.70662 1.41178 0.99616 1.34598 0.82416 0.71434 0.71885 0.78190 1.25327 1.21867 1.20746 0.88844 0.88899 0.91375 0.90444 0.91754 0.91262 0.91634 0.91266 0.90350 0.91240 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.77 14.01 29.01 0.41 -2.36 16 2 C -0.09 -1.35 4.10 -100.07 -0.41 -1.76 16 3 C -0.10 -1.56 5.69 -26.83 -0.15 -1.71 16 4 C 0.14 2.46 4.01 -65.76 -0.26 2.20 16 5 H 0.09 1.78 7.92 -51.93 -0.41 1.37 16 6 C -0.13 -1.86 6.09 -25.31 -0.15 -2.01 16 7 C -0.13 -1.89 6.11 -25.10 -0.15 -2.04 16 8 C 0.14 2.61 3.88 -65.54 -0.25 2.36 16 9 H 0.10 1.85 6.78 -51.93 -0.35 1.50 16 10 C -0.10 -1.59 5.62 -27.00 -0.15 -1.74 16 11 N -0.63 -13.82 2.72 -154.68 -0.42 -14.24 16 12 C 0.57 15.58 7.66 -12.99 -0.10 15.48 16 13 O -0.62 -18.13 12.37 5.20 0.06 -18.06 16 14 C -0.59 -16.79 9.48 -35.63 -0.34 -17.13 16 15 H 0.07 1.99 6.78 -52.49 -0.36 1.64 16 16 C 0.06 1.75 5.52 -17.37 -0.10 1.66 16 17 N -0.83 -24.17 13.64 55.55 0.76 -23.41 16 18 Si 1.13 30.27 26.00 -169.99 -4.42 25.85 16 19 H -0.32 -8.28 7.11 56.52 0.40 -7.88 16 20 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 21 H -0.28 -7.77 6.77 56.52 0.38 -7.38 16 22 H 0.09 1.06 7.97 -52.49 -0.42 0.64 16 23 H 0.09 1.05 7.97 -52.49 -0.42 0.63 16 24 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.88 7.72 -51.93 -0.40 0.48 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.88 7.73 -51.93 -0.40 0.48 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.07 0.93 7.96 -51.93 -0.41 0.52 16 32 H 0.28 7.70 8.72 -40.82 -0.36 7.34 16 LS Contribution 257.96 15.07 3.89 3.89 Total: -1.00 -31.39 257.96 -6.24 -37.63 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -4.45 Total: -4.60 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.67 Total: -7.05 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.34 Total: -37.65 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.06 Total: -18.06 kcal Atomic # 14 Polarization: 30.27 SS G_CDS: -4.42 Total: 25.85 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.39 -6.24 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598421883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.678 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds