Wall clock time and date at job start Mon Mar 30 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47645 * 2 1 4 4 C 1.38120 * 120.03441 * 265.00285 * 3 2 1 5 5 C 1.38285 * 120.06514 * 179.97438 * 4 3 2 6 6 C 1.38321 * 120.13845 * 359.97438 * 5 4 3 7 7 C 1.38077 * 120.07046 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.03444 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47047 * 259.99961 * 8 7 6 10 10 C 1.38856 * 120.03093 * 84.97590 * 3 2 1 11 11 O 1.35746 * 120.07334 * 0.04656 * 10 3 2 12 12 C 1.34836 * 116.99867 * 269.97855 * 11 10 3 13 13 H 1.07991 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.38655 * 119.99856 * 179.97438 * 12 11 10 15 15 N 1.31562 * 120.00101 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00001 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47124 * 89.99677 * 16 14 12 18 18 H 1.48500 * 109.46842 * 209.99976 * 16 14 12 19 19 H 1.48498 * 109.46745 * 329.99743 * 16 14 12 20 20 H 1.08998 * 109.46667 * 300.00126 * 1 2 3 21 21 H 1.09005 * 109.46950 * 59.99615 * 1 2 3 22 22 H 1.08992 * 109.47340 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47114 * 239.99690 * 2 1 3 24 24 H 1.08997 * 109.47131 * 120.00682 * 2 1 3 25 25 H 1.07992 * 119.96862 * 0.24863 * 4 3 2 26 26 H 1.07996 * 119.92683 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.96408 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47062 * 19.99516 * 8 7 6 29 29 H 1.09000 * 109.47499 * 139.99815 * 8 7 6 30 30 H 1.00897 * 111.00044 * 56.04513 * 9 8 7 31 31 H 1.00901 * 111.00130 * 179.97438 * 9 8 7 32 32 H 0.96998 * 119.99832 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3611 2.0378 -1.1912 5 6 2.8218 3.3417 -1.1920 6 6 2.9543 4.0321 -0.0008 7 6 2.6274 3.4208 1.1933 8 6 2.7716 4.1739 2.4906 9 7 4.0208 3.7746 3.1524 10 6 2.1649 2.1110 1.1975 11 8 1.8430 1.5072 2.3699 12 6 0.5694 1.6335 2.7941 13 1 -0.1418 2.1960 2.2075 14 6 0.1728 1.0412 3.9834 15 7 1.0391 0.3556 4.6977 16 14 -1.5916 1.2168 4.5714 17 1 -2.4068 0.0993 4.0315 18 1 -1.6244 1.1816 6.0556 19 1 -2.1458 2.5094 4.0946 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.2541 1.5029 -2.1233 26 1 3.0785 3.8218 -2.1246 27 1 3.3147 5.0502 -0.0046 28 1 2.7937 5.2448 2.2885 29 1 1.9268 3.9442 3.1400 30 1 4.8136 3.9178 2.5449 31 1 4.1409 4.2665 4.0252 32 1 0.7615 -0.0591 5.5295 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691394670.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:09 Heat of formation + Delta-G solvation = -33.298472 kcal Electronic energy + Delta-G solvation = -15319.145388 eV Core-core repulsion = 12858.066687 eV Total energy + Delta-G solvation = -2461.078701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87441 -37.83579 -36.13807 -34.19851 -33.85502 -30.73993 -29.87781 -26.88195 -25.65667 -24.64361 -22.30660 -21.17324 -19.73377 -18.19674 -17.28598 -16.77803 -16.28107 -15.88921 -15.27578 -15.17750 -14.91827 -14.52708 -13.89865 -13.75697 -13.49370 -13.40384 -13.19548 -12.87708 -12.48339 -12.39355 -12.26374 -12.14742 -11.69347 -11.37090 -11.24312 -10.18338 -9.54766 -9.37569 -9.12197 -8.11038 -5.80934 0.53226 0.60355 1.38396 1.42804 1.51539 2.33211 2.90999 3.20684 3.89190 3.92892 4.03339 4.04083 4.21069 4.37762 4.41908 4.63864 4.67005 4.73668 4.79155 4.86800 5.09684 5.19625 5.23374 5.32372 5.43949 5.54458 5.64733 5.71264 5.98474 6.20427 6.26718 6.38050 6.73152 7.31006 8.27361 9.12304 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024444 B = 0.012081 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.223654 B = 2317.038794 C = 3028.935421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.109 4.109 5 C -0.139 4.139 6 C -0.111 4.111 7 C -0.138 4.138 8 C 0.122 3.878 9 N -0.847 5.847 10 C 0.112 3.888 11 O -0.259 6.259 12 C -0.341 4.341 13 H 0.060 0.940 14 C -0.031 4.031 15 N -0.929 5.929 16 Si 0.988 3.012 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.262 1.262 20 H 0.043 0.957 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.036 0.964 25 H 0.146 0.854 26 H 0.156 0.844 27 H 0.144 0.856 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.343 0.657 31 H 0.347 0.653 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 6.816 -10.692 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.137 4.137 4 C -0.127 4.127 5 C -0.156 4.156 6 C -0.129 4.129 7 C -0.139 4.139 8 C -0.008 4.008 9 N -0.379 5.379 10 C 0.067 3.933 11 O -0.172 6.172 12 C -0.418 4.418 13 H 0.078 0.922 14 C -0.225 4.225 15 N -0.574 5.574 16 Si 0.811 3.189 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.186 1.186 20 H 0.063 0.937 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.055 0.945 25 H 0.164 0.836 26 H 0.174 0.826 27 H 0.161 0.839 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.229 5.906 -10.383 12.008 hybrid contribution -0.475 0.831 0.672 1.170 sum 0.754 6.737 -9.711 11.843 Atomic orbital electron populations 1.21740 0.94764 1.01683 1.01842 1.20217 0.96606 0.92391 1.01196 1.20636 1.01944 0.97876 0.93214 1.21187 0.99069 0.95757 0.96655 1.21341 1.01240 0.94478 0.98569 1.21159 1.00080 1.00504 0.91188 1.20482 1.03249 0.94056 0.96097 1.20329 0.93159 0.94949 0.92402 1.58377 1.03888 1.66932 1.08694 1.19292 0.95758 0.91139 0.87079 1.83868 1.28240 1.71635 1.33466 1.20888 0.83929 1.31952 1.04998 0.92203 1.25946 1.02787 0.97604 0.96117 1.70204 1.35756 1.36321 1.15087 0.85006 0.77305 0.79002 0.77593 1.19561 1.20542 1.18649 0.93746 0.91801 0.92139 0.89556 0.94469 0.83611 0.82643 0.83857 0.93338 0.93253 0.84415 0.83976 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 9.90 71.98 0.71 -4.72 16 2 C -0.07 -2.66 5.77 29.85 0.17 -2.49 16 3 C -0.14 -5.60 5.15 -19.75 -0.10 -5.70 16 4 C -0.11 -3.45 9.68 22.25 0.22 -3.23 16 5 C -0.14 -3.88 10.04 22.30 0.22 -3.66 16 6 C -0.11 -3.48 9.66 22.25 0.22 -3.26 16 7 C -0.14 -5.62 5.41 -19.74 -0.11 -5.73 16 8 C 0.12 4.79 6.58 85.56 0.56 5.35 16 9 N -0.85 -31.72 9.61 -190.00 -1.83 -33.54 16 10 C 0.11 5.40 5.54 22.58 0.13 5.53 16 11 O -0.26 -15.14 8.20 -22.76 -0.19 -15.33 16 12 C -0.34 -19.77 7.11 67.92 0.48 -19.28 16 13 H 0.06 3.39 7.43 -2.92 -0.02 3.37 16 14 C -0.03 -1.79 5.49 84.83 0.47 -1.33 16 15 N -0.93 -59.13 13.67 21.61 0.30 -58.84 16 16 Si 0.99 45.41 29.55 68.60 2.03 47.43 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 20 H 0.04 2.01 5.66 -2.39 -0.01 1.99 16 21 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 22 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.09 2.76 8.05 -2.39 -0.02 2.74 16 24 H 0.04 1.78 7.70 -2.39 -0.02 1.76 16 25 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 26 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 27 H 0.14 3.46 8.04 -2.91 -0.02 3.44 16 28 H 0.05 1.54 8.00 -2.39 -0.02 1.52 16 29 H 0.05 2.36 7.19 -2.39 -0.02 2.34 16 30 H 0.34 10.91 8.98 -89.70 -0.81 10.10 16 31 H 0.35 11.26 9.08 -89.69 -0.81 10.45 16 32 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -72.33 273.52 2.79 -69.54 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.49 Total: 29.25 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 2.97 Total: -38.52 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -1.53 Total: -92.38 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.19 Total: -15.33 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -72.33 2.79 -69.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691394670.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.245 kcal (2) G-P(sol) polarization free energy of solvation -72.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds