Wall clock time and date at job start Mon Mar 30 2020 03:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50703 * 109.46960 * 169.01458 * 3 2 1 5 5 O 1.21300 * 119.99626 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00336 * 179.97438 * 4 3 2 7 7 C 1.37099 * 120.00170 * 180.27337 * 6 4 3 8 8 H 1.08000 * 120.00174 * 222.78855 * 7 6 4 9 9 C 1.38947 * 119.99870 * 42.78960 * 7 6 4 10 10 N 1.31419 * 120.00142 * 19.09905 * 9 7 6 11 11 Si 1.86802 * 120.00161 * 199.09546 * 9 7 6 12 12 H 1.48504 * 109.47045 * 90.00093 * 11 9 7 13 13 H 1.48494 * 109.47414 * 210.00031 * 11 9 7 14 14 H 1.48498 * 109.46847 * 330.00429 * 11 9 7 15 15 C 1.46506 * 119.99852 * 0.02562 * 6 4 3 16 16 C 1.54271 * 110.03175 * 239.88446 * 15 6 4 17 17 C 1.54965 * 104.15832 * 217.13584 * 16 15 6 18 18 C 1.54889 * 102.77661 * 37.89061 * 17 16 15 19 19 C 1.53878 * 110.03000 * 122.66824 * 15 6 4 20 20 H 4.43228 * 5.59184 * 179.97438 * 4 1 2 21 21 H 1.08993 * 109.47515 * 49.01486 * 3 2 1 22 22 H 1.09005 * 109.46982 * 289.00925 * 3 2 1 23 23 H 0.96997 * 120.00006 * 174.77817 * 10 9 7 24 24 H 1.09003 * 110.01441 * 1.27755 * 15 6 4 25 25 H 1.09000 * 110.48284 * 335.78586 * 16 15 6 26 26 H 1.08997 * 110.47925 * 98.42569 * 16 15 6 27 27 H 1.08998 * 110.71732 * 279.57557 * 17 16 15 28 28 H 1.08995 * 110.91942 * 156.29685 * 17 16 15 29 29 H 1.09000 * 110.48390 * 203.40705 * 18 17 16 30 30 H 1.08995 * 110.60199 * 80.81768 * 18 17 16 31 31 H 1.08998 * 110.02945 * 238.56473 * 19 15 6 32 32 H 1.08996 * 110.03085 * 359.97438 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1477 1.3957 -0.2708 5 8 2.3589 2.3003 -0.4469 6 7 4.4725 1.6383 -0.3172 7 6 4.9289 2.9085 -0.5579 8 1 5.7557 3.0660 -1.2347 9 6 4.3277 3.9931 0.0688 10 7 3.6001 3.8083 1.1474 11 14 4.5539 5.7140 -0.6217 12 1 3.4754 5.9997 -1.6018 13 1 4.4925 6.7031 0.4842 14 1 5.8734 5.8071 -1.2965 15 6 5.4251 0.5456 -0.1050 16 6 6.3207 0.8543 1.1126 17 6 7.7126 0.3061 0.7081 18 6 7.7938 0.6559 -0.7986 19 6 6.3612 0.4191 -1.3197 20 1 -1.0502 -0.0005 -0.0001 21 1 3.0097 -0.6731 -0.7757 22 1 3.0095 -0.3339 0.9717 23 1 3.2432 4.5713 1.6283 24 1 4.8898 -0.3907 0.0530 25 1 6.3701 1.9291 1.2871 26 1 5.9499 0.3395 1.9990 27 1 7.7605 -0.7725 0.8574 28 1 8.5048 0.8072 1.2642 29 1 8.4980 -0.0036 -1.3058 30 1 8.0821 1.6980 -0.9354 31 1 6.2809 -0.5789 -1.7507 32 1 6.1065 1.1704 -2.0672 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700848340.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:36 Heat of formation + Delta-G solvation = 21.642887 kcal Electronic energy + Delta-G solvation = -15403.587897 eV Core-core repulsion = 12944.891632 eV Total energy + Delta-G solvation = -2458.696265 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.84680 -36.72112 -33.55653 -32.76130 -31.47870 -28.39942 -28.02526 -26.81523 -24.32265 -20.16532 -20.03601 -19.41846 -17.31855 -16.36709 -15.89348 -14.92383 -14.66473 -14.19330 -14.00452 -13.54767 -12.87900 -12.72549 -12.27023 -12.09238 -11.29041 -11.01027 -10.83824 -10.72184 -10.59830 -10.46079 -10.42869 -10.18879 -10.01544 -9.91700 -9.63737 -9.55042 -8.67185 -7.96967 -7.02032 -6.04752 -3.77375 3.33554 3.40594 3.44927 3.45897 3.46698 4.26633 4.44845 4.90116 5.12846 5.21333 5.26718 5.40962 5.52680 5.91265 5.99429 6.02967 6.09413 6.14969 6.17902 6.28116 6.30983 6.45175 6.46999 6.56556 6.63906 6.83506 6.98251 7.23211 7.70533 8.25146 8.37163 9.12963 9.25716 9.74084 10.37308 11.04740 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.017088 B = 0.015481 C = 0.009091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.193715 B = 1808.224259 C = 3079.078853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.142 4.142 3 C -0.034 4.034 4 C 0.477 3.523 5 O -0.527 6.527 6 N -0.449 5.449 7 C -0.342 4.342 8 H 0.079 0.921 9 C 0.072 3.928 10 N -0.832 5.832 11 Si 0.908 3.092 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.128 3.872 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.131 4.131 20 H 0.212 0.788 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.262 0.738 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 -8.267 -0.964 9.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.143 4.143 3 C -0.074 4.074 4 C 0.263 3.737 5 O -0.404 6.404 6 N -0.171 5.171 7 C -0.468 4.468 8 H 0.096 0.904 9 C -0.138 4.138 10 N -0.466 5.466 11 Si 0.736 3.264 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.200 1.200 15 C 0.023 3.977 16 C -0.164 4.164 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.170 4.170 20 H 0.229 0.771 21 H 0.112 0.888 22 H 0.114 0.886 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.279 -7.695 -0.953 8.856 hybrid contribution -0.071 0.793 -0.106 0.803 sum 4.208 -6.902 -1.059 8.152 Atomic orbital electron populations 1.24550 0.95612 1.02314 1.02374 1.22481 0.93883 0.98723 0.99187 1.18823 0.86070 0.99519 1.03002 1.19592 0.83415 0.87968 0.82698 1.90548 1.54302 1.45516 1.50012 1.43357 1.02313 1.06834 1.64638 1.18810 1.19792 0.81065 1.27182 0.90358 1.25213 0.95402 0.99237 0.93988 1.69832 1.31187 1.31176 1.14392 0.86278 0.78300 0.83038 0.78790 1.20476 1.21464 1.19954 1.21727 0.91228 0.90937 0.93817 1.22669 0.93405 1.03419 0.96917 1.22449 0.97860 0.99594 0.96153 1.22257 0.96519 1.01105 0.95613 1.22459 0.94806 1.00759 0.98951 0.77113 0.88774 0.88630 0.92744 0.91512 0.89053 0.92972 0.92522 0.92367 0.92936 0.91598 0.92879 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.33 19.25 29.55 0.57 -3.76 16 2 C -0.14 -2.98 12.58 -37.12 -0.47 -3.44 16 3 C -0.03 -0.69 4.50 -30.67 -0.14 -0.83 16 4 C 0.48 12.31 6.95 -10.99 -0.08 12.23 16 5 O -0.53 -16.13 13.69 5.54 0.08 -16.05 16 6 N -0.45 -10.96 2.46 -106.53 -0.26 -11.22 16 7 C -0.34 -9.16 7.46 -14.93 -0.11 -9.27 16 8 H 0.08 2.04 7.08 -52.49 -0.37 1.66 16 9 C 0.07 2.03 4.35 -17.47 -0.08 1.95 16 10 N -0.83 -24.83 11.67 55.50 0.65 -24.18 16 11 Si 0.91 22.15 29.60 -169.99 -5.03 17.12 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.13 2.44 3.20 -66.80 -0.21 2.23 16 16 C -0.13 -2.30 6.42 -25.03 -0.16 -2.46 16 17 C -0.12 -1.80 6.91 -24.70 -0.17 -1.97 16 18 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 19 C -0.13 -2.20 6.19 -25.61 -0.16 -2.36 16 20 H 0.21 2.99 7.80 -54.08 -0.42 2.57 16 21 H 0.09 1.59 7.77 -51.93 -0.40 1.18 16 22 H 0.10 1.74 7.82 -51.93 -0.41 1.34 16 23 H 0.26 7.57 8.32 -40.82 -0.34 7.23 16 24 H 0.07 1.13 5.82 -51.93 -0.30 0.82 16 25 H 0.09 2.01 7.10 -51.93 -0.37 1.64 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.44 6.85 -51.93 -0.36 1.09 16 LS Contribution 270.80 15.07 4.08 4.08 Total: -1.00 -33.13 270.80 -5.97 -39.09 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.30 Total: 0.78 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.18 Total: -9.61 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.39 Total: -35.41 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.08 Total: -16.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.13 -5.97 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700848340.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.734 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds