Wall clock time and date at job start Mon Mar 30 2020 03:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.50697 * 109.47081 * 155.62517 * 3 2 1 5 5 O 1.21288 * 119.99933 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00489 * 180.02562 * 4 3 2 7 7 C 1.46957 * 120.64915 * 359.81927 * 6 4 3 8 8 C 1.53197 * 108.89063 * 233.53185 * 7 6 4 9 9 C 1.53040 * 109.31110 * 305.44560 * 8 7 6 10 10 C 1.53044 * 109.53662 * 61.36306 * 9 8 7 11 11 H 1.08997 * 109.49691 * 58.58900 * 10 9 8 12 12 C 1.50702 * 109.52456 * 178.66800 * 10 9 8 13 13 H 1.07999 * 119.99626 * 359.84978 * 12 10 9 14 14 C 1.37867 * 120.00164 * 179.85610 * 12 10 9 15 15 N 1.31511 * 120.00366 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99948 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47177 * 60.00020 * 16 14 12 18 18 H 1.48503 * 109.46965 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47160 * 299.99736 * 16 14 12 20 20 C 1.46926 * 120.63278 * 180.02562 * 6 4 3 21 21 H 4.43217 * 5.59223 * 180.02562 * 4 1 2 22 22 H 1.09004 * 109.47285 * 35.62688 * 3 2 1 23 23 H 1.08997 * 109.47390 * 275.62233 * 3 2 1 24 24 H 1.09001 * 109.46843 * 113.75181 * 7 6 4 25 25 H 1.08998 * 109.59977 * 353.39397 * 7 6 4 26 26 H 1.08995 * 109.50005 * 185.49506 * 8 7 6 27 27 H 1.08996 * 109.49270 * 65.39471 * 8 7 6 28 28 H 1.08994 * 109.45892 * 301.34445 * 9 8 7 29 29 H 1.09001 * 109.45142 * 181.37673 * 9 8 7 30 30 H 0.97005 * 120.00627 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.58861 * 6.60537 * 20 6 4 32 32 H 1.08996 * 109.58519 * 246.32428 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1477 1.2950 -0.5864 5 8 2.3592 2.1346 -0.9664 6 7 4.4727 1.5199 -0.6885 7 6 5.4408 0.5143 -0.2290 8 6 6.4153 1.1754 0.7509 9 6 7.0485 2.3999 0.0862 10 6 5.9567 3.4127 -0.2666 11 1 5.4223 3.7016 0.6384 12 6 6.5838 4.6323 -0.8913 13 1 7.6548 4.6820 -1.0217 14 6 5.7905 5.6846 -1.2963 15 7 4.4863 5.6240 -1.1379 16 14 6.5680 7.1967 -2.0701 17 1 7.2976 6.8026 -3.3020 18 1 5.5072 8.1767 -2.4158 19 1 7.5171 7.8125 -1.1082 20 6 4.9771 2.7771 -1.2575 21 1 -1.0501 -0.0003 0.0003 22 1 3.0097 -0.8345 -0.5986 23 1 3.0094 -0.0999 1.0227 24 1 5.9919 0.1230 -1.0842 25 1 4.9143 -0.2982 0.2717 26 1 7.1958 0.4649 1.0230 27 1 5.8766 1.4854 1.6463 28 1 7.5662 2.0928 -0.8225 29 1 7.7606 2.8580 0.7727 30 1 3.9281 6.3642 -1.4232 31 1 4.1444 3.4577 -1.4354 32 1 5.4895 2.5731 -2.1976 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700855541.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:50 Heat of formation + Delta-G solvation = 8.662494 kcal Electronic energy + Delta-G solvation = -15062.324130 eV Core-core repulsion = 12603.064993 eV Total energy + Delta-G solvation = -2459.259137 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44394 -36.75667 -33.68117 -33.24790 -31.77844 -29.98036 -28.69736 -25.04913 -24.31653 -21.83356 -20.13932 -18.50699 -17.63894 -16.78505 -16.03646 -15.13646 -15.06864 -14.53122 -13.70724 -13.53354 -13.34469 -12.97431 -12.59961 -12.54663 -11.97524 -11.81594 -10.99631 -10.90398 -10.53779 -10.40381 -10.29849 -10.23469 -10.03264 -9.88901 -9.26138 -9.10991 -8.84339 -8.42415 -7.74163 -5.98535 -4.07936 2.90912 2.99796 3.29407 3.32982 3.38635 3.39784 3.87380 4.43452 4.53714 5.07653 5.28879 5.31906 5.44035 5.46185 5.57222 5.66377 5.95413 6.09602 6.17831 6.30461 6.59703 6.67305 6.85261 6.97283 7.15051 7.29321 7.64386 7.82308 7.88474 8.00860 8.25975 8.39527 8.87265 8.96827 9.57802 11.06590 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032366 B = 0.008437 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.884801 B = 3318.087129 C = 4052.241284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C -0.032 4.032 4 C 0.506 3.494 5 O -0.529 6.529 6 N -0.607 5.607 7 C 0.107 3.893 8 C -0.135 4.135 9 C -0.111 4.111 10 C 0.040 3.960 11 H 0.028 0.972 12 C -0.522 4.522 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.880 5.880 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.112 3.888 21 H 0.217 0.783 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.264 0.736 31 H 0.122 0.878 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -12.173 2.780 12.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.168 4.168 3 C -0.071 4.071 4 C 0.293 3.707 5 O -0.406 6.406 6 N -0.341 5.341 7 C -0.017 4.017 8 C -0.173 4.173 9 C -0.149 4.149 10 C 0.020 3.980 11 H 0.047 0.953 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.518 5.518 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.008 4.008 21 H 0.234 0.766 22 H 0.127 0.873 23 H 0.128 0.872 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.716 -11.595 2.526 11.888 hybrid contribution 0.325 0.782 -0.379 0.927 sum -0.391 -10.813 2.148 11.031 Atomic orbital electron populations 1.24730 0.95747 1.00431 1.00848 1.22223 0.93675 1.00423 1.00521 1.18734 0.86679 0.98245 1.03478 1.20171 0.82732 0.87979 0.79863 1.90737 1.54646 1.46392 1.48796 1.48514 1.04311 1.19972 1.61262 1.21683 0.91540 0.90717 0.97736 1.21952 0.98111 0.98677 0.98539 1.21626 0.99182 0.95041 0.99014 1.18963 0.91494 0.92108 0.95395 0.95339 1.21034 0.93339 1.00460 1.41253 0.92406 1.25059 0.94869 0.98458 0.95661 1.69877 1.03399 1.32099 1.46386 0.86648 0.78851 0.82708 0.79734 1.20246 1.21261 1.20274 1.22278 1.01120 0.81936 0.95440 0.76604 0.87308 0.87184 0.91880 0.91064 0.92135 0.92102 0.93155 0.93008 0.92569 0.85981 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.89 19.25 29.55 0.57 -2.33 16 2 C -0.17 -2.70 12.58 -37.12 -0.47 -3.17 16 3 C -0.03 -0.46 4.54 -30.67 -0.14 -0.60 16 4 C 0.51 10.24 7.68 -10.99 -0.08 10.16 16 5 O -0.53 -13.46 15.44 5.55 0.09 -13.38 16 6 N -0.61 -12.03 2.98 -172.77 -0.51 -12.54 16 7 C 0.11 1.57 6.34 -3.69 -0.02 1.55 16 8 C -0.13 -2.07 6.08 -26.61 -0.16 -2.24 16 9 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 10 C 0.04 0.97 2.25 -91.67 -0.21 0.77 16 11 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 12 C -0.52 -14.17 8.56 -34.44 -0.30 -14.46 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.88 -25.96 11.39 55.43 0.63 -25.33 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.11 2.73 5.39 -3.73 -0.02 2.71 16 21 H 0.22 2.22 7.80 -54.08 -0.42 1.80 16 22 H 0.11 1.22 7.95 -51.93 -0.41 0.81 16 23 H 0.11 1.31 7.69 -51.93 -0.40 0.91 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.79 5.94 -51.93 -0.31 0.48 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.12 3.51 5.12 -51.93 -0.27 3.24 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 271.30 15.07 4.09 4.09 Total: -1.00 -32.79 271.30 -6.10 -38.88 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.31 Total: 0.20 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.06 Total: -8.26 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.12 Total: -37.87 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.79 -6.10 -38.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700855541.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.546 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds