Wall clock time and date at job start Mon Mar 30 2020 03:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50700 * 109.47230 * 318.62038 * 3 2 1 5 5 O 1.21283 * 119.99803 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27949 * 4 3 2 7 7 C 1.46921 * 120.63392 * 359.43977 * 6 4 3 8 8 C 1.53624 * 108.54016 * 126.36873 * 7 6 4 9 9 C 1.53041 * 109.23819 * 54.86424 * 8 7 6 10 10 C 1.53037 * 109.53606 * 298.50541 * 9 8 7 11 11 H 1.09008 * 109.50055 * 301.41274 * 10 9 8 12 12 C 1.50701 * 109.49860 * 181.32146 * 10 9 8 13 13 H 1.08003 * 119.99777 * 0.15956 * 12 10 9 14 14 C 1.37875 * 120.00056 * 180.16142 * 12 10 9 15 15 N 1.31511 * 120.00258 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99952 * 179.97438 * 14 12 10 17 17 H 1.48509 * 109.46921 * 90.00011 * 16 14 12 18 18 H 1.48500 * 109.47342 * 209.99915 * 16 14 12 19 19 H 1.48499 * 109.47449 * 330.00445 * 16 14 12 20 20 C 1.46924 * 120.62813 * 179.72946 * 6 4 3 21 21 H 4.43230 * 5.59207 * 179.97438 * 4 1 2 22 22 H 1.09009 * 109.46632 * 198.61990 * 3 2 1 23 23 H 1.08998 * 109.46922 * 78.62548 * 3 2 1 24 24 H 1.09000 * 109.59076 * 246.20663 * 7 6 4 25 25 H 1.09000 * 109.58577 * 6.63206 * 7 6 4 26 26 H 1.08990 * 109.63928 * 294.86618 * 8 7 6 27 27 H 1.09006 * 109.45894 * 174.74079 * 8 7 6 28 28 H 1.09003 * 109.46117 * 178.48816 * 9 8 7 29 29 H 1.08996 * 109.45315 * 58.52100 * 9 8 7 30 30 H 0.96994 * 120.00307 * 179.97438 * 15 14 12 31 31 H 1.09006 * 109.58932 * 353.36359 * 20 6 4 32 32 H 1.08997 * 109.58896 * 113.79383 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1488 -1.0652 0.9392 5 8 2.3610 -1.7576 1.5482 6 7 4.4740 -1.2456 1.1062 7 6 5.4406 -0.4192 0.3704 8 6 6.4088 0.2158 1.3801 9 6 7.0440 -0.8861 2.2313 10 6 5.9528 -1.6246 3.0098 11 1 5.4131 -0.9172 3.6396 12 6 6.5824 -2.6880 3.8722 13 1 7.6540 -2.8223 3.8680 14 6 5.7903 -3.4896 4.6666 15 7 4.4854 -3.3265 4.6714 16 14 6.5707 -4.8082 5.7351 17 1 6.8974 -4.2373 7.0666 18 1 5.6208 -5.9377 5.9005 19 1 7.8143 -5.2980 5.0880 20 6 4.9794 -2.2766 2.0228 21 1 -1.0499 -0.0001 0.0003 22 1 3.0088 0.9748 0.3282 23 1 3.0094 -0.2019 -1.0075 24 1 5.9960 -1.0428 -0.3301 25 1 4.9124 0.3638 -0.1736 26 1 5.8649 0.9058 2.0251 27 1 7.1888 0.7569 0.8444 28 1 7.7519 -0.4419 2.9311 29 1 7.5669 -1.5894 1.5832 30 1 3.9281 -3.8906 5.2300 31 1 4.1469 -2.7195 2.5695 32 1 5.4980 -3.0486 1.4543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700855542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:54 Heat of formation + Delta-G solvation = 8.752471 kcal Electronic energy + Delta-G solvation = -15063.031960 eV Core-core repulsion = 12603.776724 eV Total energy + Delta-G solvation = -2459.255236 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.44276 -36.74734 -33.68095 -33.24750 -31.77025 -29.96788 -28.69403 -25.04993 -24.31345 -21.83592 -20.13402 -18.51249 -17.64103 -16.78468 -16.04049 -15.13618 -15.06698 -14.52747 -13.70025 -13.52851 -13.34229 -12.98012 -12.60212 -12.53570 -11.96986 -11.81932 -10.99940 -10.92268 -10.51145 -10.40776 -10.29834 -10.23245 -10.03311 -9.89151 -9.26004 -9.11529 -8.84091 -8.42258 -7.74042 -5.98789 -4.08015 2.90956 2.99856 3.29247 3.32012 3.38797 3.40941 3.87510 4.43402 4.53772 5.07716 5.29161 5.31922 5.44040 5.45586 5.57067 5.65951 5.95291 6.09751 6.17865 6.30462 6.59769 6.67212 6.85182 6.97363 7.15230 7.29124 7.64479 7.82326 7.88321 8.00827 8.26002 8.39455 8.87371 8.96931 9.57762 11.06415 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032373 B = 0.008439 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.715549 B = 3317.227958 C = 4050.000254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C -0.032 4.032 4 C 0.506 3.494 5 O -0.529 6.529 6 N -0.607 5.607 7 C 0.107 3.893 8 C -0.134 4.134 9 C -0.111 4.111 10 C 0.039 3.961 11 H 0.029 0.971 12 C -0.522 4.522 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.880 5.880 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.113 3.887 21 H 0.217 0.783 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.264 0.736 31 H 0.122 0.878 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 7.495 -10.000 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.168 4.168 3 C -0.071 4.071 4 C 0.292 3.708 5 O -0.406 6.406 6 N -0.341 5.341 7 C -0.017 4.017 8 C -0.172 4.172 9 C -0.149 4.149 10 C 0.020 3.980 11 H 0.047 0.953 12 C -0.560 4.560 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.518 5.518 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.007 4.007 21 H 0.234 0.766 22 H 0.128 0.872 23 H 0.127 0.873 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.698 7.025 -9.579 11.899 hybrid contribution 0.314 -0.659 0.569 0.925 sum -0.384 6.366 -9.010 11.039 Atomic orbital electron populations 1.24722 0.95748 1.00607 1.00685 1.22223 0.93677 1.00465 1.00468 1.18739 0.86673 1.00502 1.01230 1.20171 0.82739 0.84742 0.83102 1.90736 1.54702 1.47482 1.47651 1.48509 1.04319 1.37105 1.44137 1.21769 0.91570 0.94088 0.94283 1.22025 0.98137 0.98922 0.98152 1.21626 0.99167 0.96189 0.97882 1.18977 0.91536 0.95063 0.92415 0.95333 1.21075 0.93314 1.17394 1.24231 0.92358 1.25063 0.94865 0.97437 0.96709 1.69886 1.03394 1.39233 1.39242 0.86592 0.79089 0.81486 0.80822 1.20680 1.21189 1.19900 1.22291 1.01074 0.87926 0.89454 0.76613 0.87176 0.87319 0.91837 0.91049 0.92082 0.92191 0.93014 0.93161 0.92631 0.85969 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 19.25 29.55 0.57 -2.33 16 2 C -0.17 -2.70 12.58 -37.12 -0.47 -3.17 16 3 C -0.03 -0.47 4.53 -30.67 -0.14 -0.60 16 4 C 0.51 10.24 7.68 -10.98 -0.08 10.16 16 5 O -0.53 -13.46 15.44 5.55 0.09 -13.37 16 6 N -0.61 -12.02 2.97 -172.51 -0.51 -12.54 16 7 C 0.11 1.56 6.37 -3.49 -0.02 1.54 16 8 C -0.13 -2.07 6.10 -26.39 -0.16 -2.23 16 9 C -0.11 -2.17 5.10 -26.69 -0.14 -2.30 16 10 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 11 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 12 C -0.52 -14.15 8.56 -34.44 -0.29 -14.44 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.88 -25.95 11.39 55.43 0.63 -25.32 16 16 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.11 2.73 5.40 -3.71 -0.02 2.71 16 21 H 0.22 2.22 7.80 -54.10 -0.42 1.80 16 22 H 0.11 1.31 7.70 -51.92 -0.40 0.91 16 23 H 0.11 1.22 7.93 -51.93 -0.41 0.81 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.12 3.51 5.12 -51.93 -0.27 3.24 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 271.32 15.07 4.09 4.09 Total: -1.00 -32.81 271.32 -6.09 -38.90 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.31 Total: 0.17 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.06 Total: -8.26 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.12 Total: -37.86 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.81 -6.09 -38.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700855542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.655 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds