Wall clock time and date at job start Mon Mar 30 2020 03:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.50701 * 109.47056 * 46.73819 * 3 2 1 5 5 O 1.21276 * 120.00166 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99585 * 179.97438 * 4 3 2 7 7 C 1.46926 * 120.62730 * 180.02562 * 6 4 3 8 8 C 1.53191 * 108.89109 * 126.46248 * 7 6 4 9 9 C 1.53044 * 109.31440 * 54.56430 * 8 7 6 10 10 C 1.50696 * 109.46055 * 178.62547 * 9 8 7 11 11 H 1.08006 * 119.99855 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00185 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00067 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00259 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47295 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47122 * 120.00044 * 14 12 10 17 17 H 1.48498 * 109.47531 * 240.00539 * 14 12 10 18 18 C 1.53040 * 109.53662 * 298.63203 * 9 8 7 19 19 C 1.46957 * 120.65462 * 359.81587 * 6 4 3 20 20 H 4.43226 * 5.59180 * 180.02562 * 4 1 2 21 21 H 1.09002 * 109.46979 * 286.73560 * 3 2 1 22 22 H 1.08999 * 109.46690 * 166.74004 * 3 2 1 23 23 H 1.09002 * 109.58861 * 6.60251 * 7 6 4 24 24 H 1.08996 * 109.58519 * 246.32142 * 7 6 4 25 25 H 1.09003 * 109.49294 * 174.51508 * 8 7 6 26 26 H 1.09001 * 109.49969 * 294.57596 * 8 7 6 27 27 H 1.08994 * 109.45986 * 58.65006 * 9 8 7 28 28 H 0.96999 * 120.00746 * 179.97438 * 13 12 10 29 29 H 1.08995 * 109.49643 * 181.31582 * 18 9 8 30 30 H 1.08996 * 109.49892 * 301.41776 * 18 9 8 31 31 H 1.09001 * 109.46843 * 113.75468 * 19 6 4 32 32 H 1.08997 * 109.71602 * 353.46961 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1488 -0.9729 -1.0347 5 8 2.3610 -1.6053 -1.7057 6 7 4.4740 -1.1406 -1.2143 7 6 4.9793 -2.0856 -2.2195 8 6 5.9580 -1.3521 -3.1420 9 6 7.0491 -0.6892 -2.2980 10 6 8.0326 0.0051 -3.2044 11 1 7.8937 -0.0239 -4.2751 12 6 9.1098 0.6773 -2.6669 13 7 9.2792 0.7121 -1.3632 14 14 10.3293 1.5373 -3.7905 15 1 9.9169 1.3498 -5.2047 16 1 10.3583 2.9875 -3.4720 17 1 11.6820 0.9589 -3.5881 18 6 6.4148 0.3352 -1.3544 19 6 5.4412 -0.3788 -0.4120 20 1 -1.0499 0.0000 -0.0003 21 1 3.0094 -0.2951 0.9842 22 1 3.0088 1.0011 -0.2357 23 1 4.1471 -2.4755 -2.8056 24 1 5.4929 -2.9082 -1.7220 25 1 6.4128 -2.0646 -3.8301 26 1 5.4225 -0.5903 -3.7086 27 1 7.5678 -1.4490 -1.7134 28 1 10.0372 1.1847 -0.9850 29 1 7.1947 0.8235 -0.7702 30 1 5.8750 1.0814 -1.9374 31 1 5.9932 -1.0604 0.2351 32 1 4.9156 0.3573 0.1962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700855723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:46 Heat of formation + Delta-G solvation = 7.006758 kcal Electronic energy + Delta-G solvation = -14883.554407 eV Core-core repulsion = 12424.223472 eV Total energy + Delta-G solvation = -2459.330935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.72335 -36.89038 -33.77723 -33.52553 -31.42003 -30.19943 -28.78578 -26.06925 -23.05688 -22.35261 -20.26441 -18.62068 -17.75184 -16.98151 -16.16107 -15.40404 -15.31230 -14.58047 -13.75139 -13.42345 -13.32123 -13.10302 -12.66300 -12.60416 -12.12518 -11.62446 -11.33717 -10.98555 -10.64510 -10.49403 -10.40479 -10.15323 -10.12730 -9.70764 -9.39439 -9.20125 -8.95092 -8.41597 -8.04594 -6.06661 -4.12602 2.74730 2.83482 3.02198 3.25278 3.34050 3.38220 3.60463 4.38548 4.40931 4.91444 5.22977 5.39027 5.43931 5.54282 5.78050 5.91174 5.97454 6.05842 6.13275 6.24916 6.42226 6.62571 6.86205 7.00135 7.10310 7.23163 7.62771 7.68781 7.88080 7.88827 8.00248 8.36841 8.50564 8.91141 9.52899 10.98979 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052333 B = 0.006403 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.903729 B = 4371.591787 C = 4590.025828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.031 4.031 4 C 0.514 3.486 5 O -0.552 6.552 6 N -0.600 5.600 7 C 0.112 3.888 8 C -0.124 4.124 9 C 0.047 3.953 10 C -0.511 4.511 11 H 0.055 0.945 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.126 4.126 19 C 0.100 3.900 20 H 0.217 0.783 21 H 0.114 0.886 22 H 0.116 0.884 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.106 0.894 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 -0.546 4.372 9.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.169 4.169 3 C -0.070 4.070 4 C 0.301 3.699 5 O -0.431 6.431 6 N -0.332 5.332 7 C -0.010 4.010 8 C -0.162 4.162 9 C 0.029 3.971 10 C -0.550 4.550 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.164 4.164 19 C -0.021 4.021 20 H 0.234 0.766 21 H 0.132 0.868 22 H 0.134 0.866 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.033 -0.817 4.144 9.972 hybrid contribution 0.689 0.615 -0.496 1.048 sum -8.344 -0.203 3.648 9.109 Atomic orbital electron populations 1.24733 0.95740 1.00637 1.00553 1.22219 0.93637 1.00514 1.00527 1.18690 0.86546 1.01317 1.00458 1.20235 0.82294 0.83225 0.84148 1.90662 1.55136 1.48780 1.48474 1.48240 1.04950 1.41927 1.38113 1.21699 0.97794 0.91215 0.90304 1.22012 0.97043 0.99224 0.97889 1.18646 0.91341 0.93797 0.93317 1.21251 1.08019 1.32584 0.93098 0.92631 1.24953 0.97665 0.96307 0.95018 1.69835 1.29889 1.43309 1.10123 0.86561 0.81175 0.79319 0.81102 1.19831 1.21050 1.21033 1.22030 0.97070 0.99032 0.98262 1.22095 0.91019 0.94804 0.94233 0.76569 0.86817 0.86573 0.90370 0.92124 0.92082 0.92938 0.95385 0.93011 0.87620 0.94155 0.91695 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 19.25 29.55 0.57 -2.01 16 2 C -0.17 -2.47 12.58 -37.12 -0.47 -2.94 16 3 C -0.03 -0.42 4.54 -30.67 -0.14 -0.56 16 4 C 0.51 9.00 7.68 -10.98 -0.08 8.92 16 5 O -0.55 -11.55 15.44 5.56 0.09 -11.46 16 6 N -0.60 -10.55 2.98 -172.77 -0.51 -11.06 16 7 C 0.11 2.04 6.43 -3.71 -0.02 2.01 16 8 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 9 C 0.05 1.10 2.06 -91.73 -0.19 0.91 16 10 C -0.51 -13.42 8.56 -34.44 -0.29 -13.72 16 11 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 12 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 13 N -0.89 -23.99 11.30 55.43 0.63 -23.36 16 14 Si 0.89 20.58 29.54 -169.99 -5.02 15.55 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.13 -2.66 5.15 -26.63 -0.14 -2.80 16 19 C 0.10 1.69 6.33 -3.71 -0.02 1.66 16 20 H 0.22 1.91 7.80 -54.10 -0.42 1.49 16 21 H 0.11 1.23 7.95 -51.93 -0.41 0.82 16 22 H 0.12 1.37 7.69 -51.93 -0.40 0.97 16 23 H 0.08 1.44 7.01 -51.93 -0.36 1.07 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.11 2.49 6.03 -51.93 -0.31 2.18 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.93 5.95 -51.93 -0.31 0.62 16 LS Contribution 271.10 15.07 4.09 4.09 Total: -1.00 -30.00 271.10 -6.06 -36.06 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.30 Total: -0.18 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.03 Total: -9.63 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.11 Total: -34.42 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.00 -6.06 -36.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700855723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.067 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds