Wall clock time and date at job start Mon Mar 30 2020 03:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.50701 * 109.47056 * 46.73819 * 3 2 1 5 5 O 1.21276 * 120.00166 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99585 * 179.97438 * 4 3 2 7 7 C 1.46926 * 120.62730 * 180.02562 * 6 4 3 8 8 C 1.53191 * 108.89109 * 126.46248 * 7 6 4 9 9 C 1.53044 * 109.31440 * 54.56430 * 8 7 6 10 10 C 1.50696 * 109.46055 * 178.62547 * 9 8 7 11 11 H 1.08006 * 119.99855 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00185 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00067 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00259 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47295 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47122 * 120.00044 * 14 12 10 17 17 H 1.48498 * 109.47531 * 240.00539 * 14 12 10 18 18 C 1.53040 * 109.53662 * 298.63203 * 9 8 7 19 19 C 1.46957 * 120.65462 * 359.81587 * 6 4 3 20 20 H 4.43226 * 5.59180 * 180.02562 * 4 1 2 21 21 H 1.09002 * 109.46979 * 286.73560 * 3 2 1 22 22 H 1.08999 * 109.46690 * 166.74004 * 3 2 1 23 23 H 1.09002 * 109.58861 * 6.60251 * 7 6 4 24 24 H 1.08996 * 109.58519 * 246.32142 * 7 6 4 25 25 H 1.09003 * 109.49294 * 174.51508 * 8 7 6 26 26 H 1.09001 * 109.49969 * 294.57596 * 8 7 6 27 27 H 1.08994 * 109.45986 * 58.65006 * 9 8 7 28 28 H 0.96999 * 120.00746 * 179.97438 * 13 12 10 29 29 H 1.08995 * 109.49643 * 181.31582 * 18 9 8 30 30 H 1.08996 * 109.49892 * 301.41776 * 18 9 8 31 31 H 1.09001 * 109.46843 * 113.75468 * 19 6 4 32 32 H 1.08997 * 109.71602 * 353.46961 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1488 -0.9729 -1.0347 5 8 2.3610 -1.6053 -1.7057 6 7 4.4740 -1.1406 -1.2143 7 6 4.9793 -2.0856 -2.2195 8 6 5.9580 -1.3521 -3.1420 9 6 7.0491 -0.6892 -2.2980 10 6 8.0326 0.0051 -3.2044 11 1 7.8937 -0.0239 -4.2751 12 6 9.1098 0.6773 -2.6669 13 7 9.2792 0.7121 -1.3632 14 14 10.3293 1.5373 -3.7905 15 1 9.9169 1.3498 -5.2047 16 1 10.3583 2.9875 -3.4720 17 1 11.6820 0.9589 -3.5881 18 6 6.4148 0.3352 -1.3544 19 6 5.4412 -0.3788 -0.4120 20 1 -1.0499 0.0000 -0.0003 21 1 3.0094 -0.2951 0.9842 22 1 3.0088 1.0011 -0.2357 23 1 4.1471 -2.4755 -2.8056 24 1 5.4929 -2.9082 -1.7220 25 1 6.4128 -2.0646 -3.8301 26 1 5.4225 -0.5903 -3.7086 27 1 7.5678 -1.4490 -1.7134 28 1 10.0372 1.1847 -0.9850 29 1 7.1947 0.8235 -0.7702 30 1 5.8750 1.0814 -1.9374 31 1 5.9932 -1.0604 0.2351 32 1 4.9156 0.3573 0.1962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700855723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:46 Heat of formation + Delta-G solvation = -10.468013 kcal Electronic energy + Delta-G solvation = -14884.312170 eV Core-core repulsion = 12424.223472 eV Total energy + Delta-G solvation = -2460.088698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13806 -38.46310 -35.33692 -34.82722 -33.10741 -31.77466 -29.98414 -27.83385 -24.74164 -23.91104 -21.80855 -20.08798 -18.84384 -18.60680 -17.90789 -16.77490 -16.61120 -16.45824 -15.01996 -14.90932 -14.81348 -14.55746 -14.26723 -14.13504 -13.55737 -13.22535 -13.08181 -12.81104 -12.43051 -12.14243 -11.93804 -11.56124 -11.46950 -11.14514 -10.99951 -10.94639 -10.61950 -10.37461 -9.55735 -8.07181 -6.19829 1.40956 1.44807 1.54257 1.56479 1.64686 1.93665 2.33886 2.45223 3.19712 3.46753 3.68950 4.16638 4.27975 4.36163 4.46504 4.48582 4.54043 4.58711 4.75818 4.87300 5.00213 5.09013 5.19796 5.27887 5.44557 5.56333 5.66802 6.00913 6.16145 6.40920 6.47562 6.73720 6.89516 7.14090 7.47978 8.96424 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052333 B = 0.006403 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.903729 B = 4371.591787 C = 4590.025828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.216 4.216 3 C -0.026 4.026 4 C 0.511 3.489 5 O -0.590 6.590 6 N -0.602 5.602 7 C 0.116 3.884 8 C -0.114 4.114 9 C 0.044 3.956 10 C -0.535 4.535 11 H 0.045 0.955 12 C 0.020 3.980 13 N -0.910 5.910 14 Si 0.947 3.053 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.118 4.118 19 C 0.110 3.890 20 H 0.250 0.750 21 H 0.145 0.855 22 H 0.135 0.865 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.005 0.995 28 H 0.262 0.738 29 H 0.083 0.917 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 -0.035 5.213 10.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.217 4.217 3 C -0.064 4.064 4 C 0.301 3.699 5 O -0.472 6.472 6 N -0.334 5.334 7 C -0.006 4.006 8 C -0.152 4.152 9 C 0.025 3.975 10 C -0.573 4.573 11 H 0.063 0.937 12 C -0.179 4.179 13 N -0.550 5.550 14 Si 0.773 3.227 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.207 1.207 18 C -0.157 4.157 19 C -0.011 4.011 20 H 0.266 0.734 21 H 0.162 0.838 22 H 0.153 0.847 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.852 -0.300 4.996 11.051 hybrid contribution 0.918 0.439 -0.785 1.285 sum -8.935 0.140 4.211 9.878 Atomic orbital electron populations 1.25679 0.96817 0.98942 0.98879 1.22745 0.94665 1.02134 1.02137 1.18755 0.86357 1.00901 1.00385 1.20952 0.81581 0.83130 0.84278 1.90639 1.55911 1.50445 1.50157 1.48286 1.05422 1.41736 1.37927 1.21571 0.97164 0.91480 0.90406 1.21855 0.96563 0.98910 0.97851 1.18630 0.91694 0.93692 0.93485 1.21574 1.09333 1.33300 0.93124 0.93696 1.25583 0.99109 0.96914 0.96274 1.69932 1.30300 1.43656 1.11109 0.85681 0.79168 0.78436 0.79387 1.19895 1.20532 1.20694 1.21808 0.97264 0.98405 0.98198 1.22027 0.90461 0.95416 0.93227 0.73397 0.83780 0.84693 0.90539 0.90986 0.91949 0.94095 0.97662 0.92875 0.89915 0.95148 0.91042 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.35 19.25 74.32 1.43 -2.92 16 2 C -0.22 -5.84 12.58 31.12 0.39 -5.45 16 3 C -0.03 -0.62 4.54 28.04 0.13 -0.49 16 4 C 0.51 17.01 7.68 87.66 0.67 17.68 16 5 O -0.59 -24.18 15.44 -3.02 -0.05 -24.22 16 6 N -0.60 -20.22 2.98 -818.91 -2.44 -22.66 16 7 C 0.12 4.16 6.43 86.36 0.56 4.72 16 8 C -0.11 -4.63 5.30 30.67 0.16 -4.47 16 9 C 0.04 2.04 2.06 -11.51 -0.02 2.02 16 10 C -0.54 -28.49 8.56 25.60 0.22 -28.27 16 11 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 12 C 0.02 1.07 5.30 84.65 0.45 1.52 16 13 N -0.91 -49.08 11.30 21.45 0.24 -48.84 16 14 Si 0.95 42.25 29.54 68.60 2.03 44.27 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 C -0.12 -4.96 5.15 30.66 0.16 -4.80 16 19 C 0.11 3.48 6.33 86.34 0.55 4.02 16 20 H 0.25 3.55 7.80 -4.42 -0.03 3.52 16 21 H 0.14 2.56 7.95 -2.39 -0.02 2.54 16 22 H 0.14 2.74 7.69 -2.39 -0.02 2.72 16 23 H 0.08 2.78 7.01 -2.39 -0.02 2.76 16 24 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 29 H 0.08 3.90 6.03 -2.39 -0.01 3.88 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.11 2.57 5.95 -2.39 -0.01 2.56 16 Total: -1.00 -64.70 271.10 5.56 -59.13 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.09 Total: 8.76 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 4.69 Total: -16.44 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -2.20 Total: -71.50 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -64.70 5.56 -59.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700855723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.663 kcal (2) G-P(sol) polarization free energy of solvation -64.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds