Wall clock time and date at job start Mon Mar 30 2020 03:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47388 * 262.68031 * 3 2 1 5 5 C 1.37098 * 119.99617 * 85.09175 * 4 3 2 6 6 H 1.07996 * 120.00786 * 314.29152 * 5 4 3 7 7 C 1.38954 * 119.99422 * 134.55838 * 5 4 3 8 8 N 1.31411 * 119.99737 * 166.24148 * 7 5 4 9 9 Si 1.86794 * 120.00294 * 346.25401 * 7 5 4 10 10 H 1.48498 * 109.47286 * 94.92517 * 9 7 5 11 11 H 1.48499 * 109.47161 * 214.92992 * 9 7 5 12 12 H 1.48503 * 109.46998 * 334.92658 * 9 7 5 13 13 C 1.34772 * 119.99926 * 265.10122 * 4 3 2 14 14 O 1.21287 * 119.99975 * 174.96577 * 13 4 3 15 15 C 1.50701 * 120.00219 * 354.96110 * 13 4 3 16 16 C 1.53007 * 115.54982 * 279.79893 * 15 13 4 17 17 C 1.52998 * 117.49798 * 134.09160 * 15 13 4 18 18 C 1.52999 * 117.49885 * 65.46653 * 15 13 4 19 19 H 1.08998 * 117.49836 * 0.02562 * 18 15 13 20 20 C 1.53000 * 117.50085 * 214.98108 * 18 15 13 21 21 H 4.40642 * 5.51463 * 179.97438 * 4 1 2 22 22 H 1.09001 * 109.46823 * 142.68198 * 3 2 1 23 23 H 1.09000 * 109.47099 * 22.68617 * 3 2 1 24 24 H 0.96993 * 120.00184 * 179.97438 * 8 7 5 25 25 H 1.08999 * 109.46632 * 59.55222 * 16 15 13 26 26 H 1.08996 * 109.46760 * 179.54707 * 16 15 13 27 27 H 1.08994 * 109.47158 * 299.54982 * 16 15 13 28 28 H 1.08993 * 117.50204 * 0.02562 * 17 15 13 29 29 H 1.09004 * 117.49763 * 145.02091 * 17 15 13 30 30 H 1.08997 * 109.46917 * 60.00102 * 20 18 15 31 31 H 1.09005 * 109.47084 * 180.02562 * 20 18 15 32 32 H 1.08996 * 109.46997 * 299.99881 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1769 1.3700 5 6 3.2675 -0.9098 2.1952 6 1 2.4765 -1.6425 2.2554 7 6 4.4182 -1.0655 2.9585 8 7 4.4429 -1.9402 3.9389 9 14 5.9297 -0.0313 2.5912 10 1 5.9347 1.1670 3.4683 11 1 7.1527 -0.8349 2.8440 12 1 5.9034 0.3962 1.1693 13 6 3.4524 1.4071 1.8190 14 8 3.7691 1.5662 2.9789 15 6 3.4147 2.5851 0.8798 16 6 4.6334 2.7414 -0.0320 17 6 2.7346 3.8626 1.3760 18 6 2.0530 2.9954 0.3156 19 1 1.1844 2.4136 0.6240 20 6 2.0143 3.5312 -1.1170 21 1 -1.0500 0.0002 0.0000 22 1 3.0089 0.8181 -0.6230 23 1 3.0097 -0.9473 -0.3964 24 1 5.2461 -2.0492 4.4715 25 1 4.7405 1.8507 -0.6510 26 1 4.4993 3.6141 -0.6712 27 1 5.5283 2.8708 0.5766 28 1 2.3148 3.8513 2.3818 29 1 3.1554 4.8149 1.0530 30 1 2.3914 2.7699 -1.7999 31 1 0.9875 3.7822 -1.3834 32 1 2.6362 4.4234 -1.1882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704356103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:43 Heat of formation + Delta-G solvation = 56.113257 kcal Electronic energy + Delta-G solvation = -15667.552558 eV Core-core repulsion = 13210.351041 eV Total energy + Delta-G solvation = -2457.201518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73697 -36.80853 -35.06515 -32.57814 -31.53053 -29.25652 -27.71387 -26.74075 -24.93138 -21.77626 -20.30332 -18.77512 -18.01269 -16.80077 -15.96743 -15.34875 -14.56973 -14.24546 -13.83166 -13.39375 -13.21381 -12.63399 -12.57223 -12.52307 -12.27677 -11.99478 -11.83781 -11.42882 -11.14896 -10.97359 -10.38873 -9.98261 -9.90022 -9.70868 -9.59560 -9.42678 -8.62831 -8.45394 -7.69918 -6.19831 -4.02018 3.18036 3.29889 3.34558 3.41796 3.61194 3.76297 3.97965 4.49763 4.54792 4.91389 4.98536 5.04977 5.19641 5.32665 5.48103 5.52705 5.82257 5.85037 5.90076 5.96024 6.01035 6.13019 6.14363 6.25539 6.29525 6.42136 6.50654 6.55714 7.84180 8.00287 8.11400 8.75607 8.89839 9.39706 9.78858 10.86433 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027934 B = 0.013894 C = 0.010833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.134746 B = 2014.735994 C = 2584.077249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.166 4.166 3 C 0.203 3.797 4 N -0.458 5.458 5 C -0.344 4.344 6 H 0.093 0.907 7 C 0.088 3.912 8 N -0.869 5.869 9 Si 0.904 3.096 10 H -0.258 1.258 11 H -0.305 1.305 12 H -0.273 1.273 13 C 0.492 3.508 14 O -0.537 6.537 15 C -0.148 4.148 16 C -0.110 4.110 17 C -0.147 4.147 18 C -0.144 4.144 19 H 0.109 0.891 20 C -0.117 4.117 21 H 0.210 0.790 22 H 0.089 0.911 23 H 0.095 0.905 24 H 0.273 0.727 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 8.863 -11.565 14.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.168 4.168 3 C 0.079 3.921 4 N -0.180 5.180 5 C -0.470 4.470 6 H 0.111 0.889 7 C -0.120 4.120 8 N -0.504 5.504 9 Si 0.734 3.266 10 H -0.183 1.183 11 H -0.234 1.234 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.418 6.418 15 C -0.152 4.152 16 C -0.167 4.167 17 C -0.184 4.184 18 C -0.162 4.162 19 H 0.127 0.873 20 C -0.174 4.174 21 H 0.227 0.773 22 H 0.107 0.893 23 H 0.113 0.887 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.754 8.820 -10.804 14.216 hybrid contribution 0.471 0.289 -0.019 0.553 sum -2.283 9.109 -10.823 14.329 Atomic orbital electron populations 1.24693 0.95702 1.03188 1.01201 1.23899 0.95108 0.98388 0.99358 1.18666 0.83597 1.02721 0.87077 1.43551 1.59165 1.05641 1.09623 1.18828 1.03940 1.01934 1.22265 0.88914 1.25316 0.98418 0.94586 0.93679 1.69707 1.29165 1.34910 1.16663 0.86429 0.80012 0.80745 0.79397 1.18332 1.23400 1.19785 1.19472 0.82101 0.82812 0.87487 1.90537 1.49668 1.83733 1.17895 1.21563 0.95137 0.96917 1.01537 1.21310 0.95679 1.01743 0.97958 1.23062 1.02551 0.93464 0.99357 1.22557 0.95693 1.03026 0.94958 0.87340 1.21339 1.01563 1.00335 0.94166 0.77275 0.89301 0.88668 0.91759 0.91863 0.91831 0.92106 0.88468 0.88659 0.92167 0.92316 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.72 19.07 29.55 0.56 -3.16 16 2 C -0.17 -3.06 11.74 -37.12 -0.44 -3.49 16 3 C 0.20 3.91 5.45 -6.83 -0.04 3.87 16 4 N -0.46 -11.27 2.11 -117.93 -0.25 -11.52 16 5 C -0.34 -9.94 9.63 -14.93 -0.14 -10.08 16 6 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 7 C 0.09 2.65 4.99 -17.47 -0.09 2.56 16 8 N -0.87 -27.03 13.96 55.50 0.77 -26.25 16 9 Si 0.90 24.21 24.64 -169.99 -4.19 20.02 16 10 H -0.26 -7.32 6.50 56.52 0.37 -6.96 16 11 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 12 H -0.27 -6.74 7.06 56.52 0.40 -6.34 16 13 C 0.49 12.07 4.74 -10.99 -0.05 12.01 16 14 O -0.54 -15.53 13.06 5.55 0.07 -15.46 16 15 C -0.15 -2.76 1.33 -155.66 -0.21 -2.96 16 16 C -0.11 -1.74 9.01 37.16 0.33 -1.41 16 17 C -0.15 -2.40 9.51 -26.73 -0.25 -2.65 16 18 C -0.14 -2.23 4.42 -90.62 -0.40 -2.63 16 19 H 0.11 1.86 6.49 -51.93 -0.34 1.52 16 20 C -0.12 -1.36 8.98 37.16 0.33 -1.03 16 21 H 0.21 2.55 7.80 -54.09 -0.42 2.13 16 22 H 0.09 1.47 4.77 -51.93 -0.25 1.23 16 23 H 0.10 1.75 8.08 -51.93 -0.42 1.33 16 24 H 0.27 7.95 8.31 -40.82 -0.34 7.61 16 25 H 0.06 0.97 7.07 -51.93 -0.37 0.60 16 26 H 0.06 0.79 6.72 -51.93 -0.35 0.44 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 30 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.58 7.23 -51.93 -0.38 0.20 16 LS Contribution 268.32 15.07 4.04 4.04 Total: -1.00 -34.11 268.32 -4.15 -38.26 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.21 Total: -0.13 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.39 Total: -8.96 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.53 Total: -37.77 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.07 Total: -15.46 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -4.19 Total: 20.02 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.11 -4.15 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704356103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.373 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds