Wall clock time and date at job start Mon Mar 30 2020 03:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47388 * 262.68031 * 3 2 1 5 5 C 1.37098 * 119.99617 * 85.09175 * 4 3 2 6 6 H 1.07996 * 120.00786 * 314.29152 * 5 4 3 7 7 C 1.38954 * 119.99422 * 134.55838 * 5 4 3 8 8 N 1.31411 * 119.99737 * 166.24148 * 7 5 4 9 9 Si 1.86794 * 120.00294 * 346.25401 * 7 5 4 10 10 H 1.48498 * 109.47286 * 94.92517 * 9 7 5 11 11 H 1.48499 * 109.47161 * 214.92992 * 9 7 5 12 12 H 1.48503 * 109.46998 * 334.92658 * 9 7 5 13 13 C 1.34772 * 119.99926 * 265.10122 * 4 3 2 14 14 O 1.21287 * 119.99975 * 174.96577 * 13 4 3 15 15 C 1.50701 * 120.00219 * 354.96110 * 13 4 3 16 16 C 1.53007 * 115.54982 * 279.79893 * 15 13 4 17 17 C 1.52998 * 117.49798 * 134.09160 * 15 13 4 18 18 C 1.52999 * 117.49885 * 65.46653 * 15 13 4 19 19 H 1.08998 * 117.49836 * 0.02562 * 18 15 13 20 20 C 1.53000 * 117.50085 * 214.98108 * 18 15 13 21 21 H 4.40642 * 5.51463 * 179.97438 * 4 1 2 22 22 H 1.09001 * 109.46823 * 142.68198 * 3 2 1 23 23 H 1.09000 * 109.47099 * 22.68617 * 3 2 1 24 24 H 0.96993 * 120.00184 * 179.97438 * 8 7 5 25 25 H 1.08999 * 109.46632 * 59.55222 * 16 15 13 26 26 H 1.08996 * 109.46760 * 179.54707 * 16 15 13 27 27 H 1.08994 * 109.47158 * 299.54982 * 16 15 13 28 28 H 1.08993 * 117.50204 * 0.02562 * 17 15 13 29 29 H 1.09004 * 117.49763 * 145.02091 * 17 15 13 30 30 H 1.08997 * 109.46917 * 60.00102 * 20 18 15 31 31 H 1.09005 * 109.47084 * 180.02562 * 20 18 15 32 32 H 1.08996 * 109.46997 * 299.99881 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1769 1.3700 5 6 3.2675 -0.9098 2.1952 6 1 2.4765 -1.6425 2.2554 7 6 4.4182 -1.0655 2.9585 8 7 4.4429 -1.9402 3.9389 9 14 5.9297 -0.0313 2.5912 10 1 5.9347 1.1670 3.4683 11 1 7.1527 -0.8349 2.8440 12 1 5.9034 0.3962 1.1693 13 6 3.4524 1.4071 1.8190 14 8 3.7691 1.5662 2.9789 15 6 3.4147 2.5851 0.8798 16 6 4.6334 2.7414 -0.0320 17 6 2.7346 3.8626 1.3760 18 6 2.0530 2.9954 0.3156 19 1 1.1844 2.4136 0.6240 20 6 2.0143 3.5312 -1.1170 21 1 -1.0500 0.0002 0.0000 22 1 3.0089 0.8181 -0.6230 23 1 3.0097 -0.9473 -0.3964 24 1 5.2461 -2.0492 4.4715 25 1 4.7405 1.8507 -0.6510 26 1 4.4993 3.6141 -0.6712 27 1 5.5283 2.8708 0.5766 28 1 2.3148 3.8513 2.3818 29 1 3.1554 4.8149 1.0530 30 1 2.3914 2.7699 -1.7999 31 1 0.9875 3.7822 -1.3834 32 1 2.6362 4.4234 -1.1882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704356103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:43 Heat of formation + Delta-G solvation = 33.064896 kcal Electronic energy + Delta-G solvation = -15668.552010 eV Core-core repulsion = 13210.351041 eV Total energy + Delta-G solvation = -2458.200970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42339 -38.35395 -36.92707 -34.55184 -33.28655 -30.43101 -28.84462 -28.44799 -26.80393 -23.50854 -21.63507 -20.52618 -19.60594 -18.40603 -17.68912 -17.29292 -16.36172 -15.87283 -15.30858 -15.03259 -14.64673 -14.41739 -14.21293 -14.00995 -13.60752 -13.40861 -13.21892 -12.99288 -12.66424 -12.49477 -12.29782 -11.95782 -11.38465 -11.14149 -10.93543 -10.88343 -10.74923 -10.27780 -9.76148 -8.48517 -6.31015 1.16669 1.29728 1.42399 1.68872 1.93587 1.99207 2.34459 2.63402 2.82306 3.06984 3.63864 3.69909 3.80381 3.95173 4.09062 4.42622 4.44809 4.66382 4.70717 4.80491 4.86667 4.90078 5.02036 5.05402 5.15253 5.24058 5.28494 5.50164 5.65358 5.79157 6.65106 6.78549 6.82755 7.23312 7.78575 8.61408 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027934 B = 0.013894 C = 0.010833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.134746 B = 2014.735994 C = 2584.077249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.219 4.219 3 C 0.204 3.796 4 N -0.470 5.470 5 C -0.342 4.342 6 H 0.060 0.940 7 C 0.038 3.962 8 N -0.915 5.915 9 Si 0.956 3.044 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.241 1.241 13 C 0.486 3.514 14 O -0.594 6.594 15 C -0.171 4.171 16 C -0.107 4.107 17 C -0.146 4.146 18 C -0.117 4.117 19 H 0.088 0.912 20 C -0.114 4.114 21 H 0.248 0.752 22 H 0.121 0.879 23 H 0.098 0.902 24 H 0.274 0.726 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 11.091 -14.812 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.220 4.220 3 C 0.082 3.918 4 N -0.191 5.191 5 C -0.469 4.469 6 H 0.077 0.923 7 C -0.165 4.165 8 N -0.552 5.552 9 Si 0.784 3.216 10 H -0.214 1.214 11 H -0.225 1.225 12 H -0.164 1.164 13 C 0.277 3.723 14 O -0.478 6.478 15 C -0.175 4.175 16 C -0.164 4.164 17 C -0.183 4.183 18 C -0.136 4.136 19 H 0.107 0.893 20 C -0.170 4.170 21 H 0.265 0.735 22 H 0.138 0.862 23 H 0.116 0.884 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.345 11.035 -14.117 18.228 hybrid contribution 0.428 -0.390 1.020 1.173 sum -2.918 10.644 -13.097 17.127 Atomic orbital electron populations 1.25610 0.96568 1.00781 0.98323 1.23899 0.95484 1.00705 1.01883 1.18786 0.84551 1.04229 0.84238 1.43743 1.59329 1.04730 1.11345 1.18690 1.02707 1.02407 1.23074 0.92269 1.26027 1.01124 0.95691 0.93691 1.69798 1.30054 1.37133 1.18234 0.85593 0.77438 0.78193 0.80388 1.21418 1.22498 1.16418 1.20573 0.79753 0.84187 0.87788 1.90495 1.51756 1.84813 1.20781 1.21516 0.98484 0.95208 1.02269 1.21378 0.93408 1.04024 0.97636 1.23205 1.02122 0.94228 0.98744 1.22625 0.92715 1.01089 0.97170 0.89343 1.21409 1.03357 1.01328 0.90932 0.73536 0.86167 0.88404 0.91647 0.91380 0.87433 0.93730 0.91126 0.85010 0.91058 0.90661 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.76 19.07 74.32 1.42 -4.34 16 2 C -0.22 -7.66 11.74 31.13 0.37 -7.30 16 3 C 0.20 7.59 5.45 84.57 0.46 8.05 16 4 N -0.47 -23.20 2.11 -645.41 -1.36 -24.57 16 5 C -0.34 -20.44 9.63 84.04 0.81 -19.63 16 6 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 7 C 0.04 2.37 4.99 84.93 0.42 2.80 16 8 N -0.91 -59.33 13.96 21.66 0.30 -59.03 16 9 Si 0.96 51.16 24.64 68.60 1.69 52.85 16 10 H -0.29 -16.66 6.50 99.48 0.65 -16.01 16 11 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 12 H -0.24 -11.39 7.06 99.48 0.70 -10.69 16 13 C 0.49 23.78 4.74 87.66 0.42 24.19 16 14 O -0.59 -35.28 13.06 -3.05 -0.04 -35.32 16 15 C -0.17 -5.97 1.33 -52.93 -0.07 -6.05 16 16 C -0.11 -2.99 9.01 71.98 0.65 -2.34 16 17 C -0.15 -4.38 9.51 30.60 0.29 -4.08 16 18 C -0.12 -3.22 4.42 -10.79 -0.05 -3.27 16 19 H 0.09 2.81 6.49 -2.39 -0.02 2.80 16 20 C -0.11 -2.00 8.98 71.98 0.65 -1.35 16 21 H 0.25 4.96 7.80 -4.42 -0.03 4.92 16 22 H 0.12 3.62 4.77 -2.39 -0.01 3.61 16 23 H 0.10 3.51 8.08 -2.39 -0.02 3.49 16 24 H 0.27 16.70 8.31 -92.71 -0.77 15.93 16 25 H 0.07 1.81 7.07 -2.39 -0.02 1.79 16 26 H 0.11 2.04 6.72 -2.39 -0.02 2.02 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.13 2.96 8.05 -2.39 -0.02 2.94 16 30 H 0.07 1.16 8.00 -2.39 -0.02 1.14 16 31 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 1.08 7.23 -2.39 -0.02 1.06 16 Total: -1.00 -79.07 268.32 6.98 -72.09 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.03 Total: 7.30 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 5.36 Total: -13.33 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.06 Total: -83.59 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.04 Total: -35.32 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 1.69 Total: 52.85 kcal Total: -79.07 6.98 -72.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704356103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.153 kcal (2) G-P(sol) polarization free energy of solvation -79.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds