Wall clock time and date at job start Mon Mar 30 2020 03:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46864 * 162.85388 * 3 2 1 5 5 C 1.50705 * 109.47268 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99512 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00104 * 179.97438 * 5 4 3 8 8 C 1.47016 * 125.65035 * 359.96039 * 7 5 4 9 9 C 1.54318 * 107.27321 * 181.09254 * 8 7 5 10 10 C 1.55158 * 102.93908 * 22.19512 * 9 8 7 11 11 H 1.09005 * 111.03828 * 82.59038 * 10 9 8 12 12 C 1.50706 * 111.00151 * 206.42024 * 10 9 8 13 13 H 1.08005 * 119.99758 * 112.19813 * 12 10 9 14 14 C 1.37871 * 120.00102 * 292.19698 * 12 10 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.47422 * 125.64256 * 180.02562 * 7 5 4 21 21 H 4.44647 * 5.63382 * 179.97438 * 4 1 2 22 22 H 1.08995 * 109.47550 * 42.85267 * 3 2 1 23 23 H 1.09000 * 109.47158 * 282.85162 * 3 2 1 24 24 H 1.09006 * 109.47425 * 59.99999 * 4 3 2 25 25 H 1.08996 * 109.47469 * 299.99582 * 4 3 2 26 26 H 1.09001 * 109.88167 * 300.51260 * 8 7 5 27 27 H 1.09006 * 109.87896 * 61.52383 * 8 7 5 28 28 H 1.09000 * 110.72506 * 263.83198 * 9 8 7 29 29 H 1.09001 * 110.72284 * 140.55389 * 9 8 7 30 30 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 31 31 H 1.08999 * 110.37553 * 37.00225 * 20 7 5 32 32 H 1.09005 * 110.36838 * 274.66899 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.3793 -0.4253 5 6 4.6624 1.3803 -0.4247 6 8 5.2693 0.3768 -0.1151 7 7 5.3357 2.4958 -0.7692 8 6 4.7289 3.7748 -1.1659 9 6 5.8818 4.7465 -1.4947 10 6 7.0625 3.7906 -1.8101 11 1 7.0143 3.4356 -2.8396 12 6 8.3857 4.4568 -1.5331 13 1 9.0070 4.1070 -0.7219 14 6 8.8029 5.5128 -2.3152 15 7 8.0461 5.9391 -3.3027 16 14 10.4426 6.3390 -1.9713 17 1 10.6571 7.4382 -2.9465 18 1 10.4386 6.8926 -0.5934 19 1 11.5359 5.3424 -2.1013 20 6 6.8027 2.6350 -0.8120 21 1 -1.0502 -0.0004 -0.0001 22 1 3.0098 -0.7525 -0.6989 23 1 3.0095 -0.2278 1.0019 24 1 2.7917 2.1326 0.2737 25 1 2.7920 1.6078 -1.4272 26 1 4.1029 3.6308 -2.0465 27 1 4.1297 4.1709 -0.3459 28 1 6.1136 5.3750 -0.6348 29 1 5.6363 5.3561 -2.3643 30 1 7.1944 5.5103 -3.4810 31 1 7.2611 1.7135 -1.1708 32 1 7.1883 2.8924 0.1746 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706369937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:33 Heat of formation + Delta-G solvation = -0.299397 kcal Electronic energy + Delta-G solvation = -14503.207777 eV Core-core repulsion = 12043.560023 eV Total energy + Delta-G solvation = -2459.647754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.63051 -37.10855 -34.82926 -33.36354 -31.28207 -30.03708 -28.53473 -25.58451 -23.91520 -22.33029 -20.06284 -18.73579 -18.27316 -17.12961 -16.49672 -15.83548 -15.26910 -14.71249 -13.85355 -13.72216 -13.42346 -12.92199 -12.75821 -12.40451 -12.00992 -11.96155 -11.63520 -11.35111 -11.00852 -10.76595 -10.42465 -10.19340 -10.16338 -10.00433 -9.73523 -9.48227 -8.64775 -8.45463 -8.14915 -6.45049 -4.18045 2.64297 2.73374 2.92383 3.40140 3.41376 3.46702 3.60372 4.26441 4.46739 4.83407 5.04951 5.06985 5.26711 5.42246 5.47092 5.62361 5.79524 5.85832 5.88689 5.94678 6.06023 6.16287 6.45881 6.61005 6.74791 6.83805 7.03933 7.43147 7.49084 7.98388 8.06969 8.32722 8.48628 8.76093 9.53840 10.93658 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071576 B = 0.005309 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.098952 B = 5272.579764 C = 5542.145626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.180 4.180 3 C 0.001 3.999 4 C -0.130 4.130 5 C 0.521 3.479 6 O -0.555 6.555 7 N -0.613 5.613 8 C 0.097 3.903 9 C -0.127 4.127 10 C 0.029 3.971 11 H 0.033 0.967 12 C -0.595 4.595 13 H 0.053 0.947 14 C 0.023 3.977 15 N -0.908 5.908 16 Si 1.069 2.931 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.287 1.287 20 C 0.115 3.885 21 H 0.216 0.784 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.271 0.729 31 H 0.063 0.937 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 -5.231 4.533 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.180 4.180 3 C -0.036 4.036 4 C -0.170 4.170 5 C 0.310 3.690 6 O -0.435 6.435 7 N -0.345 5.345 8 C -0.026 4.026 9 C -0.166 4.166 10 C 0.010 3.990 11 H 0.051 0.949 12 C -0.633 4.633 13 H 0.072 0.928 14 C -0.181 4.181 15 N -0.544 5.544 16 Si 0.897 3.103 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.006 4.006 21 H 0.233 0.767 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.876 -4.599 4.197 11.675 hybrid contribution -1.365 -1.104 0.509 1.828 sum -11.241 -5.704 4.706 13.455 Atomic orbital electron populations 1.24869 0.95887 1.00919 1.01803 1.23212 0.94521 1.00310 0.99913 1.18446 0.83852 0.97182 1.04107 1.21558 0.92649 0.98609 1.04226 1.20140 0.89438 0.82162 0.77289 1.90672 1.70525 1.32513 1.49761 1.48753 1.09083 1.11240 1.65462 1.22185 0.97386 0.84456 0.98530 1.22879 0.94616 0.97458 1.01614 1.20004 0.94461 0.90470 0.94112 0.94905 1.21796 1.03492 1.19130 1.18886 0.92832 1.25813 1.03999 0.95144 0.93187 1.70824 1.12951 1.41867 1.28760 0.83537 0.74557 0.76294 0.75946 1.20762 1.21374 1.21359 1.22456 0.77532 1.00019 1.00616 0.76669 0.88722 0.88746 0.88819 0.88770 0.92386 0.92498 0.91322 0.91067 0.91803 0.91846 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.22 19.25 29.55 0.57 -1.65 16 2 C -0.18 -2.13 13.34 -37.12 -0.50 -2.62 16 3 C 0.00 0.01 4.99 -29.52 -0.15 -0.13 16 4 C -0.13 -1.68 4.85 -27.88 -0.14 -1.82 16 5 C 0.52 9.13 7.85 -10.98 -0.09 9.05 16 6 O -0.56 -11.43 16.24 5.55 0.09 -11.34 16 7 N -0.61 -11.45 3.33 -170.53 -0.57 -12.01 16 8 C 0.10 1.63 6.49 -3.07 -0.02 1.61 16 9 C -0.13 -2.62 5.82 -24.90 -0.14 -2.77 16 10 C 0.03 0.68 2.48 -89.63 -0.22 0.46 16 11 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 12 C -0.59 -15.86 8.49 -34.44 -0.29 -16.15 16 13 H 0.05 1.43 7.77 -52.48 -0.41 1.02 16 14 C 0.02 0.63 5.37 -17.82 -0.10 0.54 16 15 N -0.91 -25.85 13.51 55.43 0.75 -25.10 16 16 Si 1.07 24.14 29.90 -169.99 -5.08 19.05 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 20 C 0.12 2.48 6.35 -2.54 -0.02 2.46 16 21 H 0.22 1.39 7.80 -54.08 -0.42 0.97 16 22 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 23 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 24 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 29 H 0.07 1.51 6.86 -51.93 -0.36 1.15 16 30 H 0.27 7.54 5.69 -40.82 -0.23 7.31 16 31 H 0.06 1.41 8.04 -51.93 -0.42 0.99 16 32 H 0.06 1.35 8.01 -51.93 -0.42 0.93 16 LS Contribution 278.45 15.07 4.20 4.20 Total: -1.00 -30.26 278.45 -6.11 -36.37 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.41 Total: -0.15 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.09 Total: -11.02 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.18 Total: -37.12 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.08 Total: 19.05 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.26 -6.11 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706369937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.073 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds