Wall clock time and date at job start Mon Mar 30 2020 03:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46905 * 109.47396 * 2 1 4 4 C 1.53000 * 109.47644 * 120.00423 * 2 1 3 5 5 O 1.42902 * 109.46566 * 299.99729 * 4 2 1 6 6 C 1.50704 * 109.47049 * 240.00293 * 2 1 3 7 7 C 1.38636 * 119.74966 * 269.72557 * 6 2 1 8 8 C 1.37621 * 120.24936 * 179.72211 * 7 6 2 9 9 C 1.40722 * 119.73949 * 0.52513 * 8 7 6 10 10 C 1.41397 * 120.23891 * 179.72882 * 9 8 7 11 11 H 1.07997 * 119.99721 * 204.40823 * 10 9 8 12 12 C 1.39941 * 120.00264 * 24.40484 * 10 9 8 13 13 N 1.30831 * 119.99995 * 17.84634 * 12 10 9 14 14 Si 1.86797 * 120.00265 * 197.84793 * 12 10 9 15 15 H 1.48503 * 109.47147 * 60.00003 * 14 12 10 16 16 H 1.48499 * 109.47295 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47115 * 300.00239 * 14 12 10 18 18 C 1.40705 * 119.51450 * 359.74947 * 9 8 7 19 19 C 1.37622 * 119.74653 * 359.97438 * 18 9 8 20 20 H 1.09000 * 109.47634 * 59.99684 * 1 2 3 21 21 H 1.09004 * 109.47095 * 299.99429 * 1 2 3 22 22 H 1.09003 * 109.47172 * 180.02562 * 1 2 3 23 23 H 1.00898 * 110.99437 * 56.04665 * 3 2 1 24 24 H 1.00898 * 111.00215 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.47412 * 59.99817 * 4 2 1 26 26 H 1.08999 * 109.47445 * 180.02562 * 4 2 1 27 27 H 0.96702 * 113.99983 * 179.97438 * 5 4 2 28 28 H 1.08001 * 119.87181 * 359.97438 * 7 6 2 29 29 H 1.07994 * 120.13093 * 180.27613 * 8 7 6 30 30 H 0.96995 * 119.99965 * 179.97438 * 13 12 10 31 31 H 1.08005 * 120.12658 * 179.97438 * 18 9 8 32 32 H 1.08002 * 119.87338 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.5637 -0.0477 2.4159 6 6 2.0322 -0.7104 -1.2305 7 6 2.2670 -2.0761 -1.1888 8 6 2.7203 -2.7361 -2.3081 9 6 2.9560 -2.0174 -3.4948 10 6 3.4273 -2.6839 -4.6493 11 1 3.9713 -2.1364 -5.4046 12 6 3.1888 -4.0531 -4.8132 13 7 2.2580 -4.6439 -4.1088 14 14 4.1995 -5.0373 -6.0376 15 1 5.6353 -4.9653 -5.6655 16 1 3.7541 -6.4538 -6.0220 17 1 4.0123 -4.4750 -7.3993 18 6 2.7198 -0.6306 -3.5238 19 6 2.2610 0.0077 -2.3941 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 1.6441 1.9012 0.7814 24 1 3.0283 1.4119 -0.0004 25 1 1.6768 -1.7489 1.2492 26 1 3.1300 -0.7209 1.2493 27 1 1.8488 -0.4514 3.2471 28 1 2.0895 -2.6247 -0.2756 29 1 2.8983 -3.8008 -2.2748 30 1 2.0924 -5.5928 -4.2226 31 1 2.8977 -0.0692 -4.4292 32 1 2.0786 1.0720 -2.4143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713800801.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:18 Heat of formation + Delta-G solvation = -41.365493 kcal Electronic energy + Delta-G solvation = -14875.991110 eV Core-core repulsion = 12414.562596 eV Total energy + Delta-G solvation = -2461.428514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.64740 -36.73334 -34.72049 -33.13994 -29.98529 -29.03633 -28.30851 -26.05194 -24.96851 -21.33038 -20.76655 -18.68272 -17.42372 -17.18009 -15.37930 -15.20445 -14.83347 -14.49822 -13.84823 -13.70704 -12.84001 -12.72734 -12.48675 -12.08748 -11.81868 -11.39365 -11.34581 -11.12369 -10.98927 -10.82959 -10.40958 -10.35256 -9.86290 -9.47482 -9.34428 -9.10416 -8.17100 -7.43115 -7.25866 -6.75224 -4.33367 2.77639 3.06115 3.08799 3.11758 3.22779 3.93404 4.40892 4.61773 5.10289 5.43425 5.46801 5.72227 5.75099 5.90365 6.17516 6.33710 6.35810 6.52115 6.60514 6.76787 6.98064 7.09070 7.28402 7.38475 7.58983 7.67989 7.73240 7.83822 8.05546 8.08447 8.20948 8.34061 8.65676 8.91769 9.00330 10.19412 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.054324 B = 0.006771 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.304646 B = 4134.518255 C = 4370.335579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.185 3.815 3 N -0.831 5.831 4 C 0.047 3.953 5 O -0.577 6.577 6 C -0.209 4.209 7 C -0.102 4.102 8 C -0.167 4.167 9 C 0.111 3.889 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.794 5.794 14 Si 0.907 3.093 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.232 4.232 19 C -0.062 4.062 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.335 0.665 24 H 0.336 0.664 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.372 0.628 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.280 0.720 31 H 0.091 0.909 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 3.069 7.475 8.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.092 3.908 3 N -0.359 5.359 4 C -0.033 4.033 5 O -0.382 6.382 6 C -0.210 4.210 7 C -0.121 4.121 8 C -0.186 4.186 9 C 0.109 3.891 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.732 3.268 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.251 4.251 19 C -0.081 4.081 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.148 0.852 24 H 0.148 0.852 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.218 0.782 28 H 0.103 0.897 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.435 3.292 6.329 7.147 hybrid contribution 1.100 -1.332 0.767 1.890 sum 0.665 1.959 7.096 7.392 Atomic orbital electron populations 1.21704 0.94258 1.01273 1.01122 1.19295 0.94575 0.86883 0.90024 1.58903 1.13416 1.13222 1.50379 1.23275 0.97314 0.96378 0.86300 1.86406 1.77851 1.57737 1.16183 1.18748 1.14749 0.93269 0.94257 1.20561 1.00916 0.93347 0.97251 1.21255 1.05598 0.99858 0.91898 1.17641 0.87952 0.91083 0.92439 1.19570 1.31799 0.93194 1.04780 0.90540 1.25907 0.93687 0.98289 0.96255 1.69827 1.24022 1.12242 1.35847 0.86388 0.81050 0.78347 0.81044 1.18869 1.20379 1.19004 1.21020 1.11202 0.95517 0.97374 1.20384 0.97593 0.97890 0.92195 0.92287 0.93274 0.92825 0.85239 0.85161 0.93155 0.93919 0.78227 0.89719 0.86572 0.90894 0.89124 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.57 37.15 0.32 -1.88 16 2 C 0.18 3.30 0.87 -132.75 -0.12 3.18 16 3 N -0.83 -13.50 7.72 -0.19 0.00 -13.51 16 4 C 0.05 0.73 5.39 37.16 0.20 0.93 16 5 O -0.58 -7.80 12.48 -35.23 -0.44 -8.23 16 6 C -0.21 -4.51 4.82 -104.33 -0.50 -5.01 16 7 C -0.10 -2.34 9.11 -39.66 -0.36 -2.70 16 8 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 9 C 0.11 2.99 5.57 -106.83 -0.60 2.39 16 10 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 11 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 12 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 13 N -0.79 -20.62 10.95 55.55 0.61 -20.01 16 14 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 15 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 16 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 18 C -0.23 -5.78 9.80 -38.88 -0.38 -6.16 16 19 C -0.06 -1.42 9.29 -39.66 -0.37 -1.79 16 20 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 21 H 0.05 0.79 7.68 -51.93 -0.40 0.39 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.34 4.97 8.51 -39.29 -0.33 4.63 16 24 H 0.34 5.29 8.99 -39.29 -0.35 4.94 16 25 H 0.05 0.80 6.49 -51.93 -0.34 0.46 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.37 3.33 9.12 45.56 0.42 3.74 16 28 H 0.08 1.75 6.13 -52.49 -0.32 1.43 16 29 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 30 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 32 H 0.10 2.17 7.38 -52.49 -0.39 1.78 16 LS Contribution 267.53 15.07 4.03 4.03 Total: -1.00 -28.01 267.53 -6.69 -34.70 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -3.28 Total: 15.94 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -2.57 Total: -26.61 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.61 Total: -33.52 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.44 Total: -8.23 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.01 -6.69 -34.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713800801.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.664 kcal (2) G-P(sol) polarization free energy of solvation -28.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds