Wall clock time and date at job start Mon Mar 30 2020 03:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00021 * 2 1 4 4 N 1.46896 * 109.47256 * 235.93991 * 3 2 1 5 5 C 1.46905 * 111.00184 * 299.42934 * 4 3 2 6 6 C 1.50704 * 109.46995 * 293.95159 * 5 4 3 7 7 H 1.08003 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00107 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99958 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00251 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46776 * 60.00102 * 10 8 6 12 12 H 1.48500 * 109.47571 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47132 * 300.00505 * 10 8 6 14 14 C 1.46896 * 111.00007 * 63.37827 * 4 3 2 15 15 C 1.50703 * 109.46836 * 76.20601 * 14 4 3 16 16 C 1.41377 * 126.58151 * 83.75388 * 15 14 4 17 17 C 1.34515 * 106.84576 * 179.97438 * 16 15 14 18 18 O 1.34304 * 108.41576 * 359.97438 * 17 16 15 19 19 C 1.34304 * 109.48040 * 359.77042 * 18 17 16 20 20 H 1.07993 * 119.99936 * 359.97438 * 1 2 3 21 21 H 1.08000 * 119.99574 * 180.02562 * 1 2 3 22 22 H 1.08003 * 119.99965 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47036 * 355.94533 * 3 2 1 24 24 H 1.09003 * 109.46778 * 115.94369 * 3 2 1 25 25 H 1.09001 * 109.46773 * 53.94853 * 5 4 3 26 26 H 1.08993 * 109.47524 * 173.95608 * 5 4 3 27 27 H 0.97002 * 119.99529 * 179.97438 * 9 8 6 28 28 H 1.09003 * 109.47620 * 196.20626 * 14 4 3 29 29 H 1.09002 * 109.47369 * 316.21004 * 14 4 3 30 30 H 1.08008 * 126.57933 * 359.97438 * 16 15 14 31 31 H 1.07997 * 125.79044 * 179.97438 * 17 16 15 32 32 H 1.07993 * 125.79505 * 180.23456 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9801 1.3413 -1.1474 5 6 3.9569 0.2464 -1.0757 6 6 4.8607 0.4565 0.1119 7 1 4.7229 1.3170 0.7498 8 6 5.8626 -0.4504 0.3845 9 7 6.0301 -1.4986 -0.3920 10 14 6.9834 -0.1898 1.8562 11 1 6.1711 -0.1681 3.0992 12 1 7.9707 -1.2966 1.9287 13 1 7.6994 1.1030 1.7102 14 6 2.2386 1.3031 -2.4149 15 6 1.6315 2.6561 -2.6827 16 6 2.2734 3.7640 -3.2821 17 6 1.3705 4.7600 -3.3277 18 8 0.2220 4.3164 -2.7911 19 6 0.3727 3.0395 -2.4031 20 1 -0.5400 0.9353 0.0004 21 1 -0.5399 -0.9353 0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3574 2.1323 -0.0727 24 1 2.6345 1.3949 0.9241 25 1 3.4316 -0.7027 -0.9691 26 1 4.5533 0.2313 -1.9878 27 1 6.7353 -2.1364 -0.2003 28 1 2.9187 1.0430 -3.2260 29 1 1.4474 0.5561 -2.3506 30 1 3.2933 3.8031 -3.6357 31 1 1.5403 5.7486 -3.7278 32 1 -0.3868 2.4255 -1.9422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814170843.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:50 Heat of formation + Delta-G solvation = 41.441535 kcal Electronic energy + Delta-G solvation = -14833.301093 eV Core-core repulsion = 12375.463362 eV Total energy + Delta-G solvation = -2457.837731 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.21439 -37.46594 -33.32481 -32.92451 -31.64187 -29.54202 -27.12760 -26.25497 -23.69217 -21.24078 -21.21867 -19.98225 -18.85292 -17.00028 -16.21188 -15.71134 -14.97836 -14.86425 -14.57449 -14.08872 -13.73122 -13.04333 -12.63301 -12.46212 -12.16506 -11.88392 -11.27864 -11.02468 -10.81557 -10.80778 -10.58942 -10.47905 -9.88160 -9.39508 -9.28331 -8.84528 -8.44034 -8.24183 -7.20800 -6.02588 -4.03642 2.05405 2.72040 2.96991 3.33695 3.37689 3.40832 3.41455 4.43640 5.05943 5.11985 5.32315 5.38400 5.42702 5.49617 5.69459 5.86564 6.02826 6.12341 6.19793 6.40738 6.42173 6.48208 6.66086 6.84133 7.06934 7.11094 7.35188 7.36706 7.42850 7.80720 8.09386 8.20053 8.54916 9.03536 9.60407 11.08085 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033017 B = 0.007398 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.838844 B = 3783.892182 C = 4199.654838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.157 4.157 3 C 0.087 3.913 4 N -0.523 5.523 5 C 0.190 3.810 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.114 3.886 15 C -0.148 4.148 16 C -0.189 4.189 17 C -0.059 4.059 18 O -0.185 6.185 19 C -0.054 4.054 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.114 0.886 23 H 0.058 0.942 24 H 0.090 0.910 25 H -0.002 1.002 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.146 0.854 31 H 0.197 0.803 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 7.193 -3.778 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.177 4.177 3 C -0.041 4.041 4 N -0.246 5.246 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.015 4.015 15 C -0.150 4.150 16 C -0.209 4.209 17 C -0.126 4.126 18 O -0.081 6.081 19 C -0.122 4.122 20 H 0.106 0.894 21 H 0.106 0.894 22 H 0.132 0.868 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.164 0.836 31 H 0.213 0.787 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -9.941 7.641 -3.764 13.091 hybrid contribution 0.486 -0.907 0.752 1.275 sum -9.455 6.733 -3.011 11.992 Atomic orbital electron populations 1.23665 0.95943 1.00694 1.05313 1.23973 0.96202 1.01753 0.95743 1.21283 0.94114 0.92251 0.96500 1.62333 1.14277 1.48905 0.99068 1.19808 0.89176 0.86606 0.97918 1.21114 1.14167 1.08327 1.10832 0.91973 1.24967 0.97545 0.95159 0.96862 1.69949 1.32997 1.12643 1.38321 0.86582 0.80402 0.77672 0.82888 1.20297 1.21378 1.20191 1.20432 0.96479 0.90279 0.94264 1.20556 0.93567 0.98142 1.02691 1.21757 1.00920 0.93285 1.04893 1.23890 0.84270 1.00368 1.04119 1.84004 1.36110 1.26551 1.61449 1.23789 0.99149 0.83454 1.05762 0.89397 0.89406 0.86819 0.92338 0.89238 0.98414 0.95308 0.92896 0.90675 0.94363 0.83629 0.78658 0.78889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.24 14.29 29.01 0.41 -2.83 16 2 C -0.16 -2.84 7.49 -36.03 -0.27 -3.10 16 3 C 0.09 1.68 5.50 -4.98 -0.03 1.65 16 4 N -0.52 -11.23 4.62 -238.96 -1.10 -12.33 16 5 C 0.19 4.84 4.51 -4.97 -0.02 4.82 16 6 C -0.51 -14.04 8.51 -34.44 -0.29 -14.34 16 7 H 0.06 1.72 7.10 -52.48 -0.37 1.34 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.11 2.10 5.40 -4.98 -0.03 2.07 16 15 C -0.15 -2.44 5.20 -104.74 -0.54 -2.98 16 16 C -0.19 -2.89 10.87 -39.70 -0.43 -3.32 16 17 C -0.06 -0.78 12.09 29.42 0.36 -0.42 16 18 O -0.18 -2.66 10.65 5.70 0.06 -2.59 16 19 C -0.05 -0.78 11.29 29.42 0.33 -0.45 16 20 H 0.09 1.16 7.84 -52.49 -0.41 0.75 16 21 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 22 H 0.11 2.31 6.70 -52.48 -0.35 1.96 16 23 H 0.06 1.03 6.63 -51.93 -0.34 0.69 16 24 H 0.09 1.90 6.84 -51.93 -0.36 1.54 16 25 H 0.00 -0.05 6.17 -51.93 -0.32 -0.37 16 26 H 0.03 0.79 7.82 -51.93 -0.41 0.39 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.07 1.42 7.73 -51.93 -0.40 1.01 16 29 H 0.04 0.68 6.74 -51.93 -0.35 0.33 16 30 H 0.15 2.13 8.06 -52.48 -0.42 1.70 16 31 H 0.20 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.19 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 274.12 15.07 4.13 4.13 Total: -1.00 -29.94 274.12 -5.95 -35.89 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.14 Total: 1.49 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -0.61 Total: -17.43 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.37 Total: -38.08 kcal Atomic # 8 Polarization: -2.66 SS G_CDS: 0.06 Total: -2.59 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.94 -5.95 -35.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814170843.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.328 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds