Wall clock time and date at job start Mon Mar 30 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00021 * 2 1 4 4 N 1.46896 * 109.47256 * 235.93991 * 3 2 1 5 5 C 1.46905 * 111.00184 * 299.42934 * 4 3 2 6 6 C 1.50704 * 109.46995 * 293.95159 * 5 4 3 7 7 H 1.08003 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00107 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99958 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00251 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46776 * 60.00102 * 10 8 6 12 12 H 1.48500 * 109.47571 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47132 * 300.00505 * 10 8 6 14 14 C 1.46896 * 111.00007 * 63.37827 * 4 3 2 15 15 C 1.50703 * 109.46836 * 76.20601 * 14 4 3 16 16 C 1.41377 * 126.58151 * 83.75388 * 15 14 4 17 17 C 1.34515 * 106.84576 * 179.97438 * 16 15 14 18 18 O 1.34304 * 108.41576 * 359.97438 * 17 16 15 19 19 C 1.34304 * 109.48040 * 359.77042 * 18 17 16 20 20 H 1.07993 * 119.99936 * 359.97438 * 1 2 3 21 21 H 1.08000 * 119.99574 * 180.02562 * 1 2 3 22 22 H 1.08003 * 119.99965 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47036 * 355.94533 * 3 2 1 24 24 H 1.09003 * 109.46778 * 115.94369 * 3 2 1 25 25 H 1.09001 * 109.46773 * 53.94853 * 5 4 3 26 26 H 1.08993 * 109.47524 * 173.95608 * 5 4 3 27 27 H 0.97002 * 119.99529 * 179.97438 * 9 8 6 28 28 H 1.09003 * 109.47620 * 196.20626 * 14 4 3 29 29 H 1.09002 * 109.47369 * 316.21004 * 14 4 3 30 30 H 1.08008 * 126.57933 * 359.97438 * 16 15 14 31 31 H 1.07997 * 125.79044 * 179.97438 * 17 16 15 32 32 H 1.07993 * 125.79505 * 180.23456 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9801 1.3413 -1.1474 5 6 3.9569 0.2464 -1.0757 6 6 4.8607 0.4565 0.1119 7 1 4.7229 1.3170 0.7498 8 6 5.8626 -0.4504 0.3845 9 7 6.0301 -1.4986 -0.3920 10 14 6.9834 -0.1898 1.8562 11 1 6.1711 -0.1681 3.0992 12 1 7.9707 -1.2966 1.9287 13 1 7.6994 1.1030 1.7102 14 6 2.2386 1.3031 -2.4149 15 6 1.6315 2.6561 -2.6827 16 6 2.2734 3.7640 -3.2821 17 6 1.3705 4.7600 -3.3277 18 8 0.2220 4.3164 -2.7911 19 6 0.3727 3.0395 -2.4031 20 1 -0.5400 0.9353 0.0004 21 1 -0.5399 -0.9353 0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3574 2.1323 -0.0727 24 1 2.6345 1.3949 0.9241 25 1 3.4316 -0.7027 -0.9691 26 1 4.5533 0.2313 -1.9878 27 1 6.7353 -2.1364 -0.2003 28 1 2.9187 1.0430 -3.2260 29 1 1.4474 0.5561 -2.3506 30 1 3.2933 3.8031 -3.6357 31 1 1.5403 5.7486 -3.7278 32 1 -0.3868 2.4255 -1.9422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814170843.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:49 Heat of formation + Delta-G solvation = 22.076195 kcal Electronic energy + Delta-G solvation = -14834.140837 eV Core-core repulsion = 12375.463362 eV Total energy + Delta-G solvation = -2458.677475 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.34053 -39.08086 -34.97796 -34.54421 -33.19975 -30.79424 -28.99055 -27.71883 -25.53055 -22.90888 -22.33624 -21.21908 -20.32018 -18.46513 -18.01561 -16.98834 -16.73250 -16.42879 -15.96049 -15.60032 -15.19707 -14.67754 -14.13840 -13.71369 -13.58645 -13.39885 -13.19680 -12.79101 -12.58116 -12.36801 -12.21947 -12.16038 -11.74727 -11.36419 -10.62267 -10.57467 -10.22527 -9.37658 -8.92623 -8.19279 -6.28759 0.95746 1.39374 1.40338 1.43022 1.50783 1.76686 2.37103 2.40965 3.13080 3.55139 3.98370 4.07202 4.16767 4.21515 4.29258 4.61477 4.64303 4.73857 4.91034 4.96173 5.07811 5.21851 5.28495 5.34674 5.38762 5.62351 5.66333 5.74876 5.83743 6.09085 6.27348 6.38848 6.66791 6.87008 7.40377 8.91202 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033017 B = 0.007398 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.838844 B = 3783.892182 C = 4199.654838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.195 4.195 3 C 0.095 3.905 4 N -0.533 5.533 5 C 0.207 3.793 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.121 3.879 15 C -0.176 4.176 16 C -0.223 4.223 17 C -0.037 4.037 18 O -0.185 6.185 19 C -0.042 4.042 20 H 0.117 0.883 21 H 0.106 0.894 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.063 0.937 25 H -0.023 1.023 26 H -0.003 1.003 27 H 0.264 0.736 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.142 0.858 31 H 0.239 0.761 32 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 8.790 -3.125 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.215 4.215 3 C -0.033 4.033 4 N -0.256 5.256 5 C 0.081 3.919 6 C -0.559 4.559 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.007 4.007 15 C -0.178 4.178 16 C -0.242 4.242 17 C -0.104 4.104 18 O -0.081 6.081 19 C -0.110 4.110 20 H 0.135 0.865 21 H 0.124 0.876 22 H 0.097 0.903 23 H 0.101 0.899 24 H 0.081 0.919 25 H -0.005 1.005 26 H 0.015 0.985 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.160 0.840 31 H 0.255 0.745 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.731 9.253 -3.114 15.262 hybrid contribution 0.922 -1.374 0.491 1.726 sum -10.809 7.879 -2.622 13.630 Atomic orbital electron populations 1.23963 0.94455 1.02904 0.99663 1.23579 0.97341 0.99579 1.00981 1.21170 0.93833 0.93921 0.94372 1.62230 1.15315 1.46781 1.01279 1.19404 0.89555 0.87231 0.95683 1.21416 1.14772 1.08258 1.11433 0.92245 1.25858 0.99081 0.94759 0.99789 1.70078 1.33762 1.13530 1.40127 0.85497 0.78346 0.77796 0.79352 1.19294 1.20775 1.19495 1.20301 0.95983 0.92240 0.92160 1.20444 0.94948 0.97438 1.04997 1.21911 1.01620 0.94096 1.06571 1.24581 0.82867 1.01153 1.01809 1.84044 1.36490 1.26289 1.61229 1.24134 0.98701 0.83601 1.04552 0.86480 0.87574 0.90267 0.89909 0.91917 1.00497 0.98516 0.92744 0.92442 0.93685 0.84048 0.74516 0.76346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 14.29 67.78 0.97 -3.63 16 2 C -0.19 -7.01 7.49 25.64 0.19 -6.82 16 3 C 0.09 3.68 5.50 85.56 0.47 4.15 16 4 N -0.53 -23.60 4.62 -909.93 -4.20 -27.80 16 5 C 0.21 11.19 4.51 85.56 0.39 11.57 16 6 C -0.52 -29.94 8.51 25.60 0.22 -29.72 16 7 H 0.06 3.37 7.10 -2.91 -0.02 3.35 16 8 C 0.00 0.17 5.46 84.65 0.46 0.63 16 9 N -0.93 -56.77 13.29 21.44 0.28 -56.49 16 10 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.12 4.56 5.40 85.56 0.46 5.02 16 15 C -0.18 -5.64 5.20 -19.94 -0.10 -5.75 16 16 C -0.22 -6.58 10.87 22.19 0.24 -6.34 16 17 C -0.04 -0.86 12.09 66.97 0.81 -0.05 16 18 O -0.18 -4.66 10.65 -2.50 -0.03 -4.69 16 19 C -0.04 -1.10 11.29 66.97 0.76 -0.35 16 20 H 0.12 2.49 7.84 -2.91 -0.02 2.47 16 21 H 0.11 2.49 8.06 -2.91 -0.02 2.47 16 22 H 0.08 3.39 6.70 -2.91 -0.02 3.37 16 23 H 0.08 2.77 6.63 -2.39 -0.02 2.75 16 24 H 0.06 2.72 6.84 -2.39 -0.02 2.71 16 25 H -0.02 -1.29 6.17 -2.39 -0.01 -1.31 16 26 H 0.00 -0.19 7.82 -2.39 -0.02 -0.21 16 27 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.06 2.30 7.73 -2.39 -0.02 2.28 16 29 H 0.05 1.61 6.74 -2.39 -0.02 1.59 16 30 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.24 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.22 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -66.70 274.12 4.04 -62.66 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.09 Total: 10.66 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 4.86 Total: -31.27 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.92 Total: -84.29 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.03 Total: -4.69 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.70 4.04 -62.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814170843.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.735 kcal (2) G-P(sol) polarization free energy of solvation -66.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds