Wall clock time and date at job start Mon Mar 30 2020 03:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47306 * 311.92960 * 3 2 1 5 5 H 1.09003 * 109.49243 * 55.06293 * 4 3 2 6 6 C 1.53036 * 109.49661 * 175.16096 * 4 3 2 7 7 C 1.53047 * 109.53266 * 181.31543 * 6 4 3 8 8 C 1.53190 * 109.31476 * 298.63478 * 7 6 4 9 9 N 1.46925 * 108.77503 * 54.63636 * 8 7 6 10 10 C 1.34777 * 120.62931 * 126.39057 * 9 8 7 11 11 O 1.21682 * 120.00197 * 354.82625 * 10 9 8 12 12 C 1.46374 * 119.99748 * 174.82720 * 10 9 8 13 13 H 1.08001 * 120.00683 * 342.42401 * 12 10 9 14 14 C 1.40058 * 119.99672 * 162.41948 * 12 10 9 15 15 N 1.30664 * 119.99651 * 170.18982 * 14 12 10 16 16 Si 1.86798 * 120.00066 * 350.18917 * 14 12 10 17 17 H 1.48495 * 109.47244 * 84.76048 * 16 14 12 18 18 H 1.48504 * 109.47007 * 204.76238 * 16 14 12 19 19 H 1.48503 * 109.47051 * 324.76164 * 16 14 12 20 20 C 1.46926 * 118.73909 * 306.39464 * 9 8 7 21 21 H 4.44653 * 5.63242 * 180.02562 * 4 1 2 22 22 H 1.08996 * 109.46875 * 191.93108 * 3 2 1 23 23 H 1.09004 * 109.46908 * 71.92979 * 3 2 1 24 24 H 1.08992 * 109.46022 * 301.33559 * 6 4 3 25 25 H 1.09003 * 109.45857 * 61.31162 * 6 4 3 26 26 H 1.08992 * 109.49643 * 58.59041 * 7 6 4 27 27 H 1.08997 * 109.49230 * 178.68784 * 7 6 4 28 28 H 1.08995 * 109.58636 * 174.42431 * 8 7 6 29 29 H 1.09001 * 109.58832 * 294.71108 * 8 7 6 30 30 H 0.97008 * 120.00027 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.58469 * 293.81554 * 20 9 8 32 32 H 1.09007 * 109.58786 * 173.39631 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -0.9630 1.0732 5 1 2.7234 -1.9501 0.9114 6 6 4.6821 -1.0544 0.9936 7 6 5.1910 -2.0432 2.0452 8 6 4.8089 -1.5400 3.4407 9 7 3.3581 -1.3109 3.4800 10 6 2.5984 -1.8820 4.4356 11 8 3.0960 -2.6689 5.2191 12 6 1.1747 -1.5557 4.5309 13 1 0.7896 -0.6713 4.0451 14 6 0.3118 -2.3903 5.2522 15 7 -0.9122 -2.0064 5.5006 16 14 0.9107 -4.0524 5.8591 17 1 1.6100 -3.8825 7.1579 18 1 -0.2497 -4.9619 6.0368 19 1 1.8478 -4.6341 4.8647 20 6 2.7513 -0.4476 2.4577 21 1 -1.0498 -0.0003 0.0000 22 1 3.0088 1.0063 0.2124 23 1 3.0095 -0.3180 -0.9770 24 1 4.9740 -1.3976 0.0011 25 1 5.1149 -0.0716 1.1800 26 1 4.7393 -3.0203 1.8744 27 1 6.2754 -2.1253 1.9724 28 1 5.0811 -2.2874 4.1858 29 1 5.3338 -0.6078 3.6494 30 1 -1.5101 -2.5846 5.9999 31 1 3.1065 0.5750 2.5853 32 1 1.6658 -0.4742 2.5543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844004791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:19 Heat of formation + Delta-G solvation = -7.080247 kcal Electronic energy + Delta-G solvation = -15175.108237 eV Core-core repulsion = 12715.166443 eV Total energy + Delta-G solvation = -2459.941794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.02675 -36.68624 -34.10171 -32.78276 -31.95932 -30.89321 -27.08828 -26.28657 -24.35162 -22.02239 -20.23983 -18.88978 -17.72866 -16.74271 -15.97557 -15.12545 -14.38752 -14.25185 -14.14759 -13.91466 -13.18989 -12.92455 -12.57519 -12.32934 -12.04241 -12.01975 -11.55870 -10.94083 -10.82600 -10.65292 -10.48076 -10.29809 -10.17377 -9.83014 -9.72610 -9.40576 -8.98347 -7.90312 -7.49276 -6.59239 -4.78708 3.12827 3.15055 3.46644 3.49391 3.71592 4.19134 4.28471 4.56976 4.62078 5.08901 5.12587 5.20624 5.40502 5.52020 5.66163 5.73813 5.89208 5.92385 5.95989 6.03124 6.14361 6.32135 6.34476 6.46371 6.48542 6.59923 6.74549 7.12910 7.69598 7.92308 7.94410 8.36471 8.75628 9.17819 10.07562 10.42184 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.011179 C = 0.008290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.135088 B = 2504.056578 C = 3376.653049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C -0.002 4.002 4 C -0.101 4.101 5 H 0.077 0.923 6 C -0.110 4.110 7 C -0.133 4.133 8 C 0.116 3.884 9 N -0.632 5.632 10 C 0.555 3.445 11 O -0.618 6.618 12 C -0.533 4.533 13 H 0.090 0.910 14 C 0.104 3.896 15 N -0.829 5.829 16 Si 0.962 3.038 17 H -0.276 1.276 18 H -0.320 1.320 19 H -0.268 1.268 20 C 0.128 3.872 21 H 0.214 0.786 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.281 0.719 31 H 0.045 0.955 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 3.401 -10.877 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.188 4.188 3 C -0.039 4.039 4 C -0.120 4.120 5 H 0.096 0.904 6 C -0.147 4.147 7 C -0.171 4.171 8 C -0.008 4.008 9 N -0.366 5.366 10 C 0.365 3.635 11 O -0.510 6.510 12 C -0.569 4.569 13 H 0.108 0.892 14 C -0.114 4.114 15 N -0.459 5.459 16 Si 0.795 3.205 17 H -0.202 1.202 18 H -0.251 1.251 19 H -0.193 1.193 20 C 0.003 3.997 21 H 0.231 0.769 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.874 3.037 -10.406 12.836 hybrid contribution -0.094 -0.544 0.170 0.578 sum 6.780 2.493 -10.236 12.529 Atomic orbital electron populations 1.24867 0.95970 1.00731 1.00676 1.23015 0.94495 1.00652 1.00637 1.18723 0.84985 1.00679 0.99551 1.21582 0.95558 0.99671 0.95222 0.90435 1.21533 0.94874 0.99669 0.98637 1.21902 0.99963 0.99412 0.95828 1.21240 0.83049 1.00035 0.96486 1.47705 1.05931 1.52354 1.30561 1.18349 0.87634 0.78786 0.78758 1.90208 1.74163 1.40918 1.45726 1.20758 0.90223 1.12180 1.33694 0.89237 1.25718 0.93802 1.00505 0.91385 1.69565 1.06542 1.37702 1.32077 0.85315 0.74978 0.79460 0.80792 1.20244 1.25079 1.19347 1.21530 1.00592 0.92119 0.85415 0.76898 0.89784 0.89903 0.92282 0.91983 0.91802 0.91749 0.89741 0.93612 0.90885 0.93659 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.06 19.25 29.55 0.57 -2.49 16 2 C -0.19 -2.85 12.42 -37.12 -0.46 -3.31 16 3 C 0.00 -0.03 5.19 -29.51 -0.15 -0.18 16 4 C -0.10 -1.53 2.31 -90.50 -0.21 -1.74 16 5 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 6 C -0.11 -1.41 5.17 -26.69 -0.14 -1.55 16 7 C -0.13 -1.96 6.08 -26.61 -0.16 -2.12 16 8 C 0.12 2.15 6.44 -3.71 -0.02 2.12 16 9 N -0.63 -14.04 2.97 -174.43 -0.52 -14.56 16 10 C 0.56 15.22 7.21 -12.99 -0.09 15.13 16 11 O -0.62 -18.36 12.12 5.21 0.06 -18.30 16 12 C -0.53 -15.36 9.08 -35.63 -0.32 -15.68 16 13 H 0.09 2.59 6.42 -52.49 -0.34 2.25 16 14 C 0.10 3.01 5.52 -17.37 -0.10 2.91 16 15 N -0.83 -23.89 13.92 55.55 0.77 -23.11 16 16 Si 0.96 25.90 25.83 -169.99 -4.39 21.51 16 17 H -0.28 -7.66 7.11 56.52 0.40 -7.26 16 18 H -0.32 -8.10 7.11 56.52 0.40 -7.70 16 19 H -0.27 -7.53 6.82 56.52 0.39 -7.14 16 20 C 0.13 2.40 5.27 -3.71 -0.02 2.38 16 21 H 0.21 2.55 7.80 -54.10 -0.42 2.13 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.73 6.99 -51.93 -0.36 1.37 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.28 7.45 8.29 -40.82 -0.34 7.11 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 2.13 5.04 -51.92 -0.26 1.87 16 LS Contribution 267.64 15.07 4.03 4.03 Total: -1.00 -32.76 267.64 -5.49 -38.25 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -4.34 Total: -3.30 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.11 Total: -4.52 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.25 Total: -37.68 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.06 Total: -18.30 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -4.39 Total: 21.51 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.76 -5.49 -38.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844004791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.167 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds