Wall clock time and date at job start Mon Mar 30 2020 03:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47306 * 311.92960 * 3 2 1 5 5 H 1.09003 * 109.49243 * 55.06293 * 4 3 2 6 6 C 1.53036 * 109.49661 * 175.16096 * 4 3 2 7 7 C 1.53047 * 109.53266 * 181.31543 * 6 4 3 8 8 C 1.53190 * 109.31476 * 298.63478 * 7 6 4 9 9 N 1.46925 * 108.77503 * 54.63636 * 8 7 6 10 10 C 1.34777 * 120.62931 * 126.39057 * 9 8 7 11 11 O 1.21682 * 120.00197 * 354.82625 * 10 9 8 12 12 C 1.46374 * 119.99748 * 174.82720 * 10 9 8 13 13 H 1.08001 * 120.00683 * 342.42401 * 12 10 9 14 14 C 1.40058 * 119.99672 * 162.41948 * 12 10 9 15 15 N 1.30664 * 119.99651 * 170.18982 * 14 12 10 16 16 Si 1.86798 * 120.00066 * 350.18917 * 14 12 10 17 17 H 1.48495 * 109.47244 * 84.76048 * 16 14 12 18 18 H 1.48504 * 109.47007 * 204.76238 * 16 14 12 19 19 H 1.48503 * 109.47051 * 324.76164 * 16 14 12 20 20 C 1.46926 * 118.73909 * 306.39464 * 9 8 7 21 21 H 4.44653 * 5.63242 * 180.02562 * 4 1 2 22 22 H 1.08996 * 109.46875 * 191.93108 * 3 2 1 23 23 H 1.09004 * 109.46908 * 71.92979 * 3 2 1 24 24 H 1.08992 * 109.46022 * 301.33559 * 6 4 3 25 25 H 1.09003 * 109.45857 * 61.31162 * 6 4 3 26 26 H 1.08992 * 109.49643 * 58.59041 * 7 6 4 27 27 H 1.08997 * 109.49230 * 178.68784 * 7 6 4 28 28 H 1.08995 * 109.58636 * 174.42431 * 8 7 6 29 29 H 1.09001 * 109.58832 * 294.71108 * 8 7 6 30 30 H 0.97008 * 120.00027 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.58469 * 293.81554 * 20 9 8 32 32 H 1.09007 * 109.58786 * 173.39631 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -0.9630 1.0732 5 1 2.7234 -1.9501 0.9114 6 6 4.6821 -1.0544 0.9936 7 6 5.1910 -2.0432 2.0452 8 6 4.8089 -1.5400 3.4407 9 7 3.3581 -1.3109 3.4800 10 6 2.5984 -1.8820 4.4356 11 8 3.0960 -2.6689 5.2191 12 6 1.1747 -1.5557 4.5309 13 1 0.7896 -0.6713 4.0451 14 6 0.3118 -2.3903 5.2522 15 7 -0.9122 -2.0064 5.5006 16 14 0.9107 -4.0524 5.8591 17 1 1.6100 -3.8825 7.1579 18 1 -0.2497 -4.9619 6.0368 19 1 1.8478 -4.6341 4.8647 20 6 2.7513 -0.4476 2.4577 21 1 -1.0498 -0.0003 0.0000 22 1 3.0088 1.0063 0.2124 23 1 3.0095 -0.3180 -0.9770 24 1 4.9740 -1.3976 0.0011 25 1 5.1149 -0.0716 1.1800 26 1 4.7393 -3.0203 1.8744 27 1 6.2754 -2.1253 1.9724 28 1 5.0811 -2.2874 4.1858 29 1 5.3338 -0.6078 3.6494 30 1 -1.5101 -2.5846 5.9999 31 1 3.1065 0.5750 2.5853 32 1 1.6658 -0.4742 2.5543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844004791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:18 Heat of formation + Delta-G solvation = -28.486086 kcal Electronic energy + Delta-G solvation = -15176.036463 eV Core-core repulsion = 12715.166443 eV Total energy + Delta-G solvation = -2460.870021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.67736 -38.43764 -35.46742 -34.97679 -33.47408 -32.17226 -28.93855 -27.73965 -25.92324 -23.41833 -21.77239 -20.53797 -18.84455 -18.71621 -17.99353 -16.91478 -16.06313 -15.72761 -15.50051 -15.30240 -14.80271 -14.46861 -14.18274 -13.83968 -13.80657 -13.64858 -13.25683 -12.86179 -12.56698 -12.17936 -11.98192 -11.69733 -11.60997 -11.31139 -11.21229 -10.91310 -10.88192 -10.04071 -9.27560 -8.82194 -7.02015 1.28220 1.30874 1.52779 1.96199 2.00741 2.05045 2.29832 2.68770 3.26159 3.57033 3.93590 3.97278 4.05480 4.19514 4.39826 4.52690 4.69143 4.75254 4.83174 4.91262 4.96237 5.02312 5.07890 5.18261 5.24103 5.29310 5.35146 5.54220 5.66930 5.99718 6.23544 6.60293 6.81421 7.11442 7.95882 8.24245 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.011179 C = 0.008290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.135088 B = 2504.056578 C = 3376.653049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.207 4.207 3 C 0.002 3.998 4 C -0.093 4.093 5 H 0.050 0.950 6 C -0.102 4.102 7 C -0.126 4.126 8 C 0.108 3.892 9 N -0.633 5.633 10 C 0.549 3.451 11 O -0.648 6.648 12 C -0.552 4.552 13 H 0.078 0.922 14 C 0.071 3.929 15 N -0.849 5.849 16 Si 1.007 2.993 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.290 1.290 20 C 0.123 3.877 21 H 0.230 0.770 22 H 0.107 0.893 23 H 0.115 0.885 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.292 0.708 31 H 0.067 0.933 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 3.997 -12.644 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.207 4.207 3 C -0.034 4.034 4 C -0.112 4.112 5 H 0.069 0.931 6 C -0.139 4.139 7 C -0.164 4.164 8 C -0.015 4.015 9 N -0.365 5.365 10 C 0.356 3.644 11 O -0.543 6.543 12 C -0.588 4.588 13 H 0.096 0.904 14 C -0.144 4.144 15 N -0.480 5.480 16 Si 0.839 3.161 17 H -0.217 1.217 18 H -0.221 1.221 19 H -0.217 1.217 20 C 0.000 4.000 21 H 0.246 0.754 22 H 0.125 0.875 23 H 0.133 0.867 24 H 0.111 0.889 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.568 3.655 -12.210 15.357 hybrid contribution -0.593 -0.659 0.703 1.131 sum 7.975 2.997 -11.507 14.317 Atomic orbital electron populations 1.25572 0.97130 1.01003 1.00932 1.23820 0.95820 1.00517 1.00511 1.18868 0.83281 1.01231 1.00065 1.21472 0.97697 0.98734 0.93314 0.93106 1.21540 0.92356 1.00405 0.99599 1.21876 1.02112 0.98728 0.93726 1.21538 0.80642 1.00745 0.98568 1.47714 1.07528 1.51532 1.29693 1.18281 0.87706 0.78897 0.79470 1.90174 1.74782 1.42180 1.47152 1.20948 0.91505 1.12213 1.34176 0.90379 1.26211 0.94130 1.02311 0.91792 1.69563 1.06925 1.38707 1.32775 0.84694 0.74760 0.77763 0.78873 1.21734 1.22128 1.21705 1.21695 0.98610 0.92873 0.86853 0.75377 0.87495 0.86717 0.88925 0.89616 0.93924 0.88144 0.92503 0.90982 0.89783 0.91468 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -6.78 19.25 74.32 1.43 -5.35 16 2 C -0.21 -6.01 12.42 31.13 0.39 -5.63 16 3 C 0.00 0.05 5.19 28.79 0.15 0.20 16 4 C -0.09 -2.58 2.31 -10.72 -0.02 -2.60 16 5 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 6 C -0.10 -2.13 5.17 30.62 0.16 -1.98 16 7 C -0.13 -3.33 6.08 30.67 0.19 -3.14 16 8 C 0.11 3.82 6.44 86.36 0.56 4.37 16 9 N -0.63 -27.96 2.97 -824.01 -2.45 -30.41 16 10 C 0.55 30.73 7.21 86.36 0.62 31.35 16 11 O -0.65 -39.35 12.12 -4.29 -0.05 -39.40 16 12 C -0.55 -32.74 9.08 24.83 0.23 -32.51 16 13 H 0.08 4.70 6.42 -2.91 -0.02 4.68 16 14 C 0.07 4.20 5.52 85.31 0.47 4.67 16 15 N -0.85 -49.40 13.92 21.84 0.30 -49.10 16 16 Si 1.01 54.14 25.83 68.60 1.77 55.92 16 17 H -0.29 -16.13 7.11 99.48 0.71 -15.42 16 18 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 19 H -0.29 -16.52 6.82 99.48 0.68 -15.84 16 20 C 0.12 4.51 5.27 86.36 0.46 4.97 16 21 H 0.23 5.49 7.80 -4.43 -0.03 5.45 16 22 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 2.32 6.99 -2.39 -0.02 2.31 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 30 H 0.29 15.45 8.29 -92.70 -0.77 14.68 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.06 2.84 5.04 -2.38 -0.01 2.83 16 Total: -1.00 -72.83 267.64 5.26 -67.58 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.07 Total: 1.06 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.62 Total: -5.64 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.15 Total: -79.51 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.05 Total: -39.40 kcal Atomic # 14 Polarization: 54.14 SS G_CDS: 1.77 Total: 55.92 kcal Total: -72.83 5.26 -67.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844004791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.089 kcal (2) G-P(sol) polarization free energy of solvation -72.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds