Wall clock time and date at job start Mon Mar 30 2020 03:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46657 * 151.03959 * 3 2 1 5 5 H 1.08991 * 109.52499 * 305.07755 * 4 3 2 6 6 C 1.53043 * 109.49580 * 184.99548 * 4 3 2 7 7 C 1.53032 * 109.52813 * 178.68758 * 6 4 3 8 8 C 1.53174 * 109.32647 * 61.37846 * 7 6 4 9 9 N 1.46928 * 108.76504 * 305.35360 * 8 7 6 10 10 C 1.34774 * 120.63118 * 233.59353 * 9 8 7 11 11 O 1.21694 * 120.00097 * 174.78860 * 10 9 8 12 12 C 1.46374 * 120.00073 * 354.77247 * 10 9 8 13 13 H 1.08000 * 119.99946 * 5.02107 * 12 10 9 14 14 C 1.40048 * 120.00490 * 185.01104 * 12 10 9 15 15 N 1.30676 * 119.99520 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00174 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47012 * 90.00376 * 16 14 12 18 18 H 1.48505 * 109.46761 * 210.00196 * 16 14 12 19 19 H 1.48494 * 109.47024 * 330.00151 * 16 14 12 20 20 C 1.46932 * 118.73829 * 53.60468 * 9 8 7 21 21 H 4.44644 * 5.63487 * 180.02562 * 4 1 2 22 22 H 1.08994 * 109.47041 * 31.03975 * 3 2 1 23 23 H 1.09006 * 109.46556 * 271.03604 * 3 2 1 24 24 H 1.09000 * 109.46308 * 298.71039 * 6 4 3 25 25 H 1.09003 * 109.45788 * 58.67768 * 6 4 3 26 26 H 1.09005 * 109.49941 * 181.31218 * 7 6 4 27 27 H 1.08997 * 109.50197 * 301.41038 * 7 6 4 28 28 H 1.08993 * 109.58864 * 185.57528 * 8 7 6 29 29 H 1.08994 * 109.59167 * 65.13853 * 8 7 6 30 30 H 0.97001 * 119.99858 * 180.02562 * 15 14 12 31 31 H 1.09000 * 109.58430 * 186.60056 * 20 9 8 32 32 H 1.09005 * 109.69657 * 66.25541 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.2631 -0.6985 5 1 2.7201 1.3284 -1.6956 6 6 4.6807 1.2052 -0.8097 7 6 5.1882 2.4521 -1.5373 8 6 4.8095 3.6986 -0.7316 9 7 3.3593 3.6863 -0.4956 10 6 2.5995 4.7466 -0.8343 11 8 1.3891 4.6885 -0.7221 12 6 3.2300 5.9682 -1.3368 13 1 4.2953 5.9929 -1.5130 14 6 2.4521 7.1051 -1.5893 15 7 1.1632 7.0753 -1.3758 16 14 3.2568 8.6638 -2.2312 17 1 3.2621 8.6427 -3.7160 18 1 2.4945 9.8463 -1.7557 19 1 4.6532 8.7416 -1.7322 20 6 2.7533 2.4961 0.1168 21 1 -1.0502 -0.0002 0.0003 22 1 3.0097 -0.8796 -0.5299 23 1 3.0093 -0.0178 1.0276 24 1 5.1163 1.1647 0.1887 25 1 4.9705 0.3154 -1.3687 26 1 6.2724 2.3993 -1.6369 27 1 4.7338 2.5064 -2.5266 28 1 5.0807 4.5927 -1.2927 29 1 5.3351 3.6902 0.2232 30 1 0.6243 7.8626 -1.5510 31 1 1.6680 2.5970 0.1156 32 1 3.1091 2.3886 1.1415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844004792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:23 Heat of formation + Delta-G solvation = 2.942669 kcal Electronic energy + Delta-G solvation = -15017.025844 eV Core-core repulsion = 12557.518676 eV Total energy + Delta-G solvation = -2459.507167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.76762 -36.18186 -34.09634 -32.54610 -31.62324 -30.58210 -27.27851 -25.86538 -24.09523 -21.86538 -20.23531 -18.83538 -17.77611 -16.43480 -15.70992 -14.89872 -14.45267 -14.17471 -13.91759 -13.78916 -12.99807 -12.78450 -12.57681 -12.25147 -11.84774 -11.47037 -11.09693 -10.96802 -10.90539 -10.62600 -10.42011 -10.22284 -10.00171 -9.94973 -9.74628 -9.63204 -8.83649 -7.53854 -7.15615 -6.17340 -4.62187 3.11290 3.13114 3.14619 3.21308 3.24443 4.10299 4.56426 4.62256 4.63149 5.17791 5.21425 5.28719 5.50969 5.72589 5.78169 5.83842 5.98144 6.00206 6.05554 6.16045 6.23945 6.34231 6.47743 6.57971 6.60449 6.71198 6.87351 7.47691 7.68504 7.92393 8.17425 8.39646 9.04282 9.48461 10.60783 10.79642 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035295 B = 0.008185 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.122871 B = 3420.094788 C = 4093.149465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C -0.004 4.004 4 C -0.098 4.098 5 H 0.074 0.926 6 C -0.108 4.108 7 C -0.135 4.135 8 C 0.121 3.879 9 N -0.642 5.642 10 C 0.559 3.441 11 O -0.578 6.578 12 C -0.545 4.545 13 H 0.073 0.927 14 C 0.087 3.913 15 N -0.769 5.769 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C 0.127 3.873 21 H 0.214 0.786 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.268 0.732 31 H 0.084 0.916 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -9.946 1.076 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.182 4.182 3 C -0.041 4.041 4 C -0.118 4.118 5 H 0.092 0.908 6 C -0.146 4.146 7 C -0.174 4.174 8 C -0.004 4.004 9 N -0.380 5.380 10 C 0.365 3.635 11 O -0.460 6.460 12 C -0.582 4.582 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.189 1.189 20 C 0.003 3.997 21 H 0.231 0.769 22 H 0.101 0.899 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.838 -9.847 1.141 11.504 hybrid contribution 0.256 0.711 -0.330 0.824 sum 6.094 -9.136 0.811 11.012 Atomic orbital electron populations 1.24842 0.95958 1.01064 1.01219 1.23092 0.94581 1.00228 1.00280 1.18770 0.84862 0.98714 1.01803 1.21560 0.95647 0.94086 1.00515 0.90754 1.21515 0.94770 0.97824 1.00482 1.21951 0.99800 0.95640 1.00008 1.21415 0.82978 0.97933 0.98041 1.48172 1.06536 1.16533 1.66786 1.18254 0.85960 0.81937 0.77363 1.90591 1.14319 1.82325 1.58802 1.20992 0.94960 0.95509 1.46709 0.90910 1.25738 0.94428 0.99645 0.93441 1.70025 1.05452 1.28726 1.35530 0.86398 0.79964 0.81092 0.79470 1.19741 1.20466 1.18871 1.21159 1.00156 0.84525 0.93896 0.76924 0.89935 0.89807 0.92114 0.92524 0.91903 0.91798 0.89039 0.94105 0.92138 0.89795 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.26 19.25 29.55 0.57 -2.69 16 2 C -0.18 -2.89 12.43 -37.12 -0.46 -3.35 16 3 C 0.00 -0.06 5.19 -29.52 -0.15 -0.21 16 4 C -0.10 -1.60 2.31 -90.50 -0.21 -1.81 16 5 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 6 C -0.11 -1.48 5.17 -26.69 -0.14 -1.61 16 7 C -0.14 -2.05 6.08 -26.62 -0.16 -2.22 16 8 C 0.12 2.27 6.31 -3.72 -0.02 2.25 16 9 N -0.64 -15.04 2.97 -174.44 -0.52 -15.56 16 10 C 0.56 16.31 7.62 -12.99 -0.10 16.21 16 11 O -0.58 -19.20 14.46 5.19 0.08 -19.12 16 12 C -0.55 -15.48 8.86 -35.63 -0.32 -15.80 16 13 H 0.07 1.87 5.69 -52.49 -0.30 1.58 16 14 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 15 N -0.77 -23.33 11.84 55.55 0.66 -22.67 16 16 Si 0.91 20.20 29.56 -169.99 -5.02 15.18 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 20 C 0.13 2.61 5.43 -3.71 -0.02 2.59 16 21 H 0.21 2.54 7.80 -54.08 -0.42 2.12 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.81 5.37 -51.93 -0.28 1.53 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 31 H 0.08 2.01 6.44 -51.93 -0.33 1.68 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 271.17 15.07 4.09 4.09 Total: -1.00 -34.64 271.17 -6.10 -40.75 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.27 Total: 1.63 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.11 Total: -4.29 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.14 Total: -38.24 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.08 Total: -19.12 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.64 -6.10 -40.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844004792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.692 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds