Wall clock time and date at job start Mon Mar 30 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46868 * 60.44602 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46957 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99692 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00142 * 180.02562 * 6 5 4 9 9 C 1.47067 * 136.05762 * 359.62722 * 8 6 5 10 10 C 1.53751 * 87.88788 * 152.96729 * 9 8 6 11 11 C 1.50700 * 114.26847 * 139.79597 * 10 9 8 12 12 H 1.08002 * 119.99181 * 266.47065 * 11 10 9 13 13 C 1.37871 * 120.00236 * 86.46904 * 11 10 9 14 14 N 1.31521 * 119.99795 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00291 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47374 * 89.99560 * 15 13 11 17 17 H 1.48501 * 109.47347 * 209.99885 * 15 13 11 18 18 H 1.48500 * 109.46791 * 330.00008 * 15 13 11 19 19 C 1.47067 * 136.05471 * 179.97438 * 8 6 5 20 20 H 4.44653 * 5.63320 * 180.02562 * 4 1 2 21 21 H 1.09000 * 109.47409 * 300.44671 * 3 2 1 22 22 H 1.09001 * 109.47194 * 180.44099 * 3 2 1 23 23 H 1.08993 * 109.46955 * 300.00020 * 4 3 2 24 24 H 1.09000 * 109.47050 * 59.99849 * 4 3 2 25 25 H 1.08993 * 109.47839 * 299.99931 * 5 4 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 5 4 3 27 27 H 1.09004 * 113.46270 * 267.69734 * 9 8 6 28 28 H 1.09001 * 113.46751 * 38.13094 * 9 8 6 29 29 H 1.09003 * 114.39060 * 272.67593 * 10 9 8 30 30 H 0.96995 * 119.99694 * 180.02562 * 14 13 11 31 31 H 1.08993 * 113.46865 * 321.86494 * 19 8 6 32 32 H 1.09004 * 113.46495 * 92.24945 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.7107 -1.2549 5 6 4.6863 -0.7094 -1.2552 6 6 5.1890 -1.4094 -2.4915 7 8 4.4010 -1.8649 -3.2931 8 7 6.5141 -1.5302 -2.7058 9 6 7.7415 -1.1248 -2.0044 10 6 8.4492 -2.3141 -2.6742 11 6 9.8492 -2.0162 -3.1457 12 1 10.0197 -1.6965 -4.1631 13 6 10.9123 -2.1518 -2.2783 14 7 12.1340 -1.8913 -2.6897 15 14 10.6174 -2.7054 -0.5188 16 1 10.6909 -4.1869 -0.4471 17 1 11.6535 -2.1150 0.3662 18 1 9.2733 -2.2545 -0.0767 19 6 7.3689 -2.1201 -3.7470 20 1 -1.0499 0.0001 -0.0002 21 1 3.0096 -0.5199 0.8859 22 1 3.0089 1.0285 0.0079 23 1 2.7934 -1.7384 -1.2628 24 1 2.7927 -0.1901 -2.1408 25 1 5.0489 0.3184 -1.2474 26 1 5.0502 -1.2297 -0.3692 27 1 8.1243 -0.1556 -2.3245 28 1 7.6715 -1.2138 -0.9203 29 1 8.3700 -3.2524 -2.1251 30 1 12.8819 -1.9870 -2.0796 31 1 6.9816 -3.0570 -4.1473 32 1 7.6526 -1.4139 -4.5273 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855474124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:39 Heat of formation + Delta-G solvation = 19.443532 kcal Electronic energy + Delta-G solvation = -14202.970716 eV Core-core repulsion = 11744.179080 eV Total energy + Delta-G solvation = -2458.791636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19868 -39.02103 -36.46300 -34.64989 -33.27226 -31.45171 -28.96392 -26.81719 -26.71593 -23.28894 -21.64820 -19.85151 -19.17357 -18.90527 -17.83398 -17.05582 -16.64433 -16.35434 -15.68388 -15.05474 -14.92454 -14.69962 -14.13920 -13.63169 -13.51801 -13.37591 -13.20223 -12.64637 -12.49042 -12.45795 -11.96187 -11.79625 -11.59315 -11.20200 -11.15582 -10.96635 -10.78070 -10.59599 -9.61142 -8.25418 -6.33767 1.45294 1.47360 1.58010 1.64312 1.82657 1.93683 2.07324 2.41897 3.06513 3.47505 3.59103 4.02429 4.05966 4.14632 4.29646 4.42384 4.51361 4.62593 4.64353 4.66843 4.79329 4.82372 4.84543 4.98760 5.18151 5.22040 5.31518 5.39665 5.62675 6.30270 6.72688 6.72971 6.91282 7.16504 7.34205 8.90219 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047064 B = 0.005401 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.785822 B = 5182.548715 C = 5599.716432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.218 4.218 3 C -0.010 4.010 4 C -0.090 4.090 5 C -0.125 4.125 6 C 0.525 3.475 7 O -0.600 6.600 8 N -0.647 5.647 9 C 0.099 3.901 10 C -0.015 4.015 11 C -0.515 4.515 12 H 0.038 0.962 13 C 0.018 3.982 14 N -0.946 5.946 15 Si 0.943 3.057 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.223 1.223 19 C 0.109 3.891 20 H 0.242 0.758 21 H 0.105 0.895 22 H 0.106 0.894 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.268 0.732 31 H 0.060 0.940 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 4.151 9.643 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.218 4.218 3 C -0.046 4.046 4 C -0.129 4.129 5 C -0.164 4.164 6 C 0.317 3.683 7 O -0.483 6.483 8 N -0.381 5.381 9 C -0.023 4.023 10 C -0.035 4.035 11 C -0.553 4.553 12 H 0.056 0.944 13 C -0.180 4.180 14 N -0.585 5.585 15 Si 0.766 3.234 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.146 1.146 19 C -0.014 4.014 20 H 0.259 0.741 21 H 0.124 0.876 22 H 0.124 0.876 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.187 3.958 9.315 19.090 hybrid contribution 0.352 -0.308 0.010 0.468 sum -15.835 3.651 9.325 18.736 Atomic orbital electron populations 1.25711 0.97031 1.00547 1.00088 1.23763 0.95723 1.01059 1.01222 1.18812 0.84054 1.03085 0.98660 1.21161 0.92993 1.00968 0.97731 1.21647 0.96660 1.02993 0.95084 1.21129 0.79401 0.79042 0.88711 1.90638 1.55203 1.52255 1.50196 1.50020 1.04101 1.57047 1.26904 1.23731 0.79813 1.00433 0.98315 1.20724 0.92388 0.95467 0.94879 1.20940 0.90266 1.45840 0.98283 0.94388 1.25924 0.94259 0.94267 1.03598 1.70054 1.00133 1.50197 1.38123 0.85818 0.80188 0.78659 0.78744 1.20238 1.21474 1.14568 1.22983 0.87927 0.97337 0.93106 0.74149 0.87643 0.87621 0.92651 0.92671 0.86393 0.86469 0.89507 0.89397 0.91546 0.92345 0.92180 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.98 19.25 74.32 1.43 -2.55 16 2 C -0.22 -4.51 13.34 31.13 0.42 -4.09 16 3 C -0.01 -0.16 5.70 28.79 0.16 0.00 16 4 C -0.09 -2.02 4.46 30.60 0.14 -1.88 16 5 C -0.12 -2.77 5.53 29.85 0.17 -2.61 16 6 C 0.52 17.85 8.08 87.66 0.71 18.55 16 7 O -0.60 -25.15 16.76 -3.03 -0.05 -25.21 16 8 N -0.65 -23.03 3.69 -857.78 -3.16 -26.19 16 9 C 0.10 3.42 7.44 83.27 0.62 4.04 16 10 C -0.02 -0.62 2.96 -11.13 -0.03 -0.66 16 11 C -0.52 -26.67 9.38 25.60 0.24 -26.43 16 12 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 13 C 0.02 0.94 5.47 84.65 0.46 1.41 16 14 N -0.95 -55.32 13.96 21.45 0.30 -55.02 16 15 Si 0.94 38.97 27.15 68.60 1.86 40.84 16 16 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 17 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.22 -7.79 5.72 99.48 0.57 -7.22 16 19 C 0.11 4.30 8.17 83.18 0.68 4.98 16 20 H 0.24 2.57 7.80 -4.42 -0.03 2.54 16 21 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 24 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 25 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.99 8.10 -2.38 -0.02 2.97 16 28 H 0.09 2.57 7.15 -2.39 -0.02 2.55 16 29 H 0.07 2.70 7.03 -2.39 -0.02 2.68 16 30 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.97 8.10 -2.38 -0.02 2.96 16 Total: -1.00 -67.21 282.73 4.88 -62.33 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.95 Total: 12.50 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.99 Total: -9.25 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -2.86 Total: -81.21 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.86 Total: 40.84 kcal Total: -67.21 4.88 -62.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855474124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.773 kcal (2) G-P(sol) polarization free energy of solvation -67.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds