Wall clock time and date at job start Mon Mar 30 2020 02:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 359.97438 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08726 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.52995 * 109.47067 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46958 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00119 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99872 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00198 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99832 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47187 * 59.99894 * 16 14 12 18 18 H 1.48501 * 109.46776 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47074 * 299.99470 * 16 14 12 20 20 H 1.09004 * 109.47206 * 300.00224 * 1 2 3 21 21 H 1.08997 * 109.46745 * 60.00389 * 1 2 3 22 22 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.98747 * 0.25239 * 4 3 2 24 24 H 1.07997 * 119.90793 * 179.97438 * 5 4 3 25 25 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 26 26 H 1.07999 * 120.00480 * 179.97438 * 7 6 5 27 27 H 0.96996 * 119.99633 * 180.02562 * 9 8 7 28 28 H 1.09000 * 109.46950 * 300.00065 * 10 9 8 29 29 H 1.08998 * 109.47411 * 59.99531 * 10 9 8 30 30 H 1.08994 * 109.47175 * 299.99584 * 11 10 9 31 31 H 1.08997 * 109.47673 * 59.99925 * 11 10 9 32 32 H 0.96995 * 120.00243 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 -0.0005 5 6 1.9229 3.6060 0.0000 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0011 8 6 3.4376 1.2868 0.0016 9 7 4.2034 0.1152 0.0016 10 6 5.6662 0.1962 0.0016 11 6 6.2551 -1.2158 0.0023 12 6 7.7599 -1.1325 0.0016 13 1 8.2473 -0.1687 0.0004 14 6 8.5143 -2.2866 0.0015 15 7 7.9207 -3.4602 0.0025 16 14 10.3794 -2.1832 0.0015 17 1 10.8350 -1.4569 1.2140 18 1 10.9510 -3.5538 0.0020 19 1 10.8349 -1.4569 -1.2110 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2152 2.3193 0.0032 24 1 1.3342 4.5114 -0.0008 25 1 3.7903 4.6452 0.0005 26 1 5.1400 2.5874 0.0011 27 1 3.7656 -0.7503 0.0016 28 1 6.0005 0.7294 -0.8884 29 1 6.0006 0.7294 0.8915 30 1 5.9208 -1.7485 0.8925 31 1 5.9209 -1.7494 -0.8874 32 1 8.4514 -4.2721 0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020040134.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:15 Heat of formation + Delta-G solvation = -40.707094 kcal Electronic energy + Delta-G solvation = -14321.834744 eV Core-core repulsion = 11860.434780 eV Total energy + Delta-G solvation = -2461.399963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04850 -38.46170 -36.94479 -35.01736 -32.21463 -30.98431 -29.42881 -27.92281 -26.38856 -23.70171 -22.77767 -21.87185 -19.19540 -18.49950 -17.75617 -16.86390 -16.60108 -16.49934 -15.71327 -15.68155 -15.18860 -15.00414 -14.27480 -14.09381 -13.80475 -13.26951 -12.92988 -12.84557 -12.52431 -12.35240 -12.26756 -11.88806 -11.84463 -11.53663 -11.37387 -10.90897 -10.56459 -9.40542 -8.23999 -8.04090 -6.36152 0.54050 0.74874 1.41324 1.44824 1.52694 2.35624 2.45244 2.75945 2.99827 3.10384 3.99049 4.18144 4.35249 4.41623 4.44514 4.48828 4.52890 4.63033 4.74049 4.76525 4.87274 4.98251 5.30963 5.37196 5.52011 5.57066 5.72256 5.75225 5.98822 6.09988 6.28489 6.66906 6.79219 6.93694 7.33811 8.88457 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043251 B = 0.005541 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.229769 B = 5051.912823 C = 5673.394824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.348 6.348 3 C 0.028 3.972 4 C -0.162 4.162 5 C -0.150 4.150 6 C -0.106 4.106 7 C -0.189 4.189 8 C 0.171 3.829 9 N -0.747 5.747 10 C 0.151 3.849 11 C 0.021 3.979 12 C -0.545 4.545 13 H 0.067 0.933 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.971 3.029 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.265 1.265 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.110 0.890 23 H 0.150 0.850 24 H 0.150 0.850 25 H 0.145 0.855 26 H 0.123 0.877 27 H 0.397 0.603 28 H 0.048 0.952 29 H 0.048 0.952 30 H -0.004 1.004 31 H -0.004 1.004 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 12.299 -0.005 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.263 6.263 3 C -0.020 4.020 4 C -0.182 4.182 5 C -0.170 4.170 6 C -0.124 4.124 7 C -0.212 4.212 8 C 0.068 3.932 9 N -0.376 5.376 10 C 0.027 3.973 11 C -0.016 4.016 12 C -0.583 4.583 13 H 0.085 0.915 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.795 3.205 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.190 1.190 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.128 0.872 23 H 0.168 0.832 24 H 0.168 0.832 25 H 0.163 0.837 26 H 0.141 0.859 27 H 0.230 0.770 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.383 11.952 -0.004 17.943 hybrid contribution 0.596 -0.821 0.000 1.014 sum -12.787 11.131 -0.003 16.953 Atomic orbital electron populations 1.23228 0.76727 1.04951 1.02057 1.85978 1.23254 1.26987 1.90106 1.18706 0.90213 0.85852 1.07230 1.21280 1.00536 0.91348 1.04988 1.21035 0.94446 0.97485 1.04026 1.21120 0.94221 0.97741 0.99343 1.20737 1.00285 0.90680 1.09544 1.17748 0.88148 0.88250 0.99076 1.44874 1.05252 1.05657 1.81834 1.21189 0.78385 0.98440 0.99305 1.19096 0.95465 0.91708 0.95342 1.21468 0.92050 0.93302 1.51493 0.91492 1.26000 1.04483 0.94829 0.94333 1.70096 1.37826 0.98191 1.51087 0.85408 0.78431 0.77330 0.79324 1.18999 1.20849 1.18987 0.91761 0.91753 0.87204 0.83211 0.83224 0.83694 0.85930 0.76954 0.93348 0.93353 0.98546 0.98553 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.35 -10.65 9.74 -93.69 -0.91 -11.56 16 3 C 0.03 0.88 6.70 22.59 0.15 1.03 16 4 C -0.16 -3.97 9.04 22.35 0.20 -3.77 16 5 C -0.15 -3.35 10.04 22.28 0.22 -3.12 16 6 C -0.11 -2.65 10.04 22.27 0.22 -2.42 16 7 C -0.19 -6.04 9.31 22.38 0.21 -5.83 16 8 C 0.17 6.15 6.67 38.22 0.25 6.41 16 9 N -0.75 -30.24 5.73 -338.98 -1.94 -32.18 16 10 C 0.15 6.64 4.86 86.38 0.42 7.06 16 11 C 0.02 1.15 5.09 29.85 0.15 1.30 16 12 C -0.54 -31.07 9.11 25.60 0.23 -30.83 16 13 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 14 C 0.00 0.10 5.46 84.65 0.46 0.57 16 15 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 16 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 21 H 0.06 1.03 7.67 -2.39 -0.02 1.01 16 22 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.15 2.69 6.30 -2.91 -0.02 2.67 16 24 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 25 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 26 H 0.12 3.93 6.74 -2.91 -0.02 3.92 16 27 H 0.40 16.45 7.84 -92.71 -0.73 15.73 16 28 H 0.05 2.09 7.95 -2.39 -0.02 2.07 16 29 H 0.05 2.09 7.95 -2.39 -0.02 2.07 16 30 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -66.63 274.44 3.48 -63.14 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.38 Total: 19.22 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 3.64 Total: -28.03 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -1.66 Total: -88.86 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.91 Total: -11.56 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -66.63 3.48 -63.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020040134.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.438 kcal (2) G-P(sol) polarization free energy of solvation -66.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds