Wall clock time and date at job start Mon Mar 30 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 N 1.46496 * 109.47378 * 179.97438 * 8 7 6 10 10 C 1.36932 * 120.00443 * 180.02562 * 9 8 7 11 11 H 1.08006 * 120.00072 * 0.02562 * 10 9 8 12 12 C 1.38815 * 120.00368 * 180.02562 * 10 9 8 13 13 N 1.31620 * 119.99897 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99784 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47149 * 90.00334 * 14 12 10 16 16 H 1.48503 * 109.46880 * 210.00496 * 14 12 10 17 17 H 1.48498 * 109.47145 * 330.00395 * 14 12 10 18 18 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 19 19 C 1.38143 * 120.05579 * 359.44512 * 18 6 5 20 20 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 21 21 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 22 22 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 23 23 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 26 26 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 27 27 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 28 28 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 29 29 H 0.97001 * 119.99484 * 0.02562 * 9 8 7 30 30 H 0.97000 * 119.99364 * 179.97438 * 13 12 10 31 31 H 1.08001 * 119.97259 * 179.69844 * 18 6 5 32 32 H 1.07992 * 120.02912 * 180.24892 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 7 4.8813 6.7803 -1.4383 10 6 5.1910 7.3920 -2.6236 11 1 4.9449 6.9121 -3.5594 12 6 5.8211 8.6288 -2.6225 13 7 6.1183 9.2169 -3.7619 14 14 6.2460 9.4592 -1.0041 15 1 7.6061 9.0437 -0.5767 16 1 6.2111 10.9334 -1.1799 17 1 5.2586 9.0606 0.0310 18 6 1.9209 3.6048 0.0081 19 6 1.2914 2.3752 0.0014 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 4.0208 0.3801 -0.0005 24 1 5.1344 2.5752 -0.0008 25 1 3.3580 5.7459 0.5176 26 1 4.9441 4.9378 0.5160 27 1 4.8445 4.7475 -1.9543 28 1 3.2585 5.5555 -1.9527 29 1 5.1019 7.2114 -0.5978 30 1 6.5583 10.0814 -3.7611 31 1 1.3340 4.5114 0.0143 32 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020044628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:48 Heat of formation + Delta-G solvation = -6.017751 kcal Electronic energy + Delta-G solvation = -14095.135043 eV Core-core repulsion = 11635.239322 eV Total energy + Delta-G solvation = -2459.895720 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.15035 -37.83974 -35.16124 -32.44800 -31.08585 -30.67538 -28.19024 -26.82521 -23.69434 -22.61229 -21.55335 -20.67112 -18.21162 -17.53229 -16.30136 -15.85569 -15.38455 -14.54840 -14.30519 -14.02724 -13.93560 -13.58097 -13.11936 -12.78442 -12.62909 -12.11855 -11.72527 -11.57380 -11.16754 -10.94463 -10.84742 -10.59772 -10.56556 -10.12287 -9.56993 -8.97884 -8.85843 -8.02691 -7.20540 -5.74292 -3.09779 1.37498 1.46067 3.17291 3.39383 3.42181 3.46927 3.79054 4.61492 4.73618 4.85682 4.94179 4.96229 4.97416 5.24166 5.36044 5.43603 5.54151 5.60857 5.74699 5.78448 5.89903 6.07370 6.14815 6.31503 6.41152 6.61454 6.76099 6.81278 6.90988 7.33695 8.02655 8.44858 9.24137 9.96400 10.16622 11.44274 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.066111 B = 0.004729 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.431189 B = 5920.057795 C = 5975.134872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.112 3.888 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.101 4.101 7 C -0.091 4.091 8 C 0.163 3.837 9 N -0.758 5.758 10 C -0.244 4.244 11 H 0.090 0.910 12 C 0.003 3.997 13 N -0.935 5.935 14 Si 0.886 3.114 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.277 1.277 18 C -0.077 4.077 19 C -0.206 4.206 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.097 0.903 23 H 0.128 0.872 24 H 0.130 0.870 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.361 0.639 30 H 0.259 0.741 31 H 0.125 0.875 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 -16.669 10.541 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.068 3.932 4 C -0.168 4.168 5 C -0.095 4.095 6 C -0.102 4.102 7 C -0.128 4.128 8 C 0.036 3.964 9 N -0.404 5.404 10 C -0.374 4.374 11 H 0.108 0.892 12 C -0.193 4.193 13 N -0.583 5.583 14 Si 0.716 3.284 15 H -0.210 1.210 16 H -0.217 1.217 17 H -0.203 1.203 18 C -0.095 4.095 19 C -0.225 4.225 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.115 0.885 23 H 0.146 0.854 24 H 0.148 0.852 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.193 0.807 30 H 0.069 0.931 31 H 0.143 0.857 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.247 -16.817 10.286 22.218 hybrid contribution 0.035 0.851 1.007 1.319 sum -10.211 -15.966 11.293 22.062 Atomic orbital electron populations 1.23011 0.78706 1.03624 1.01342 1.86044 1.21149 1.27231 1.89102 1.19009 0.92400 0.83972 0.97837 1.20390 0.91263 0.98575 1.06606 1.20931 1.00074 0.90904 0.97562 1.19845 0.93488 0.95416 1.01459 1.20802 1.00166 0.92630 0.99241 1.20599 0.95870 0.87464 0.92441 1.42739 1.72749 1.19559 1.05339 1.19082 1.31803 1.00618 0.85870 0.89236 1.24683 1.00875 0.97333 0.96385 1.69709 1.47284 1.17406 1.23951 0.86522 0.78401 0.79067 0.84408 1.21042 1.21719 1.20319 1.20894 0.94150 0.97016 0.97434 1.21181 0.99760 0.92380 1.09136 0.92804 0.92679 0.88497 0.85435 0.85173 0.91118 0.91017 0.95374 0.95520 0.80688 0.93076 0.85670 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.75 10.50 -19.44 -0.20 -3.95 16 3 C 0.11 1.43 6.69 -39.21 -0.26 1.17 16 4 C -0.15 -1.90 9.99 -39.43 -0.39 -2.29 16 5 C -0.08 -1.01 9.69 -39.61 -0.38 -1.40 16 6 C -0.10 -1.44 5.14 -104.60 -0.54 -1.98 16 7 C -0.09 -1.43 5.46 -27.88 -0.15 -1.58 16 8 C 0.16 3.28 6.24 -4.04 -0.03 3.25 16 9 N -0.76 -18.61 5.41 -59.91 -0.32 -18.93 16 10 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 11 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 12 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 13 N -0.94 -29.88 13.97 55.49 0.78 -29.10 16 14 Si 0.89 22.37 27.74 -169.99 -4.71 17.66 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 17 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 18 C -0.08 -1.01 9.69 -39.61 -0.38 -1.40 16 19 C -0.21 -2.49 9.04 -39.43 -0.36 -2.84 16 20 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 21 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 22 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 24 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 25 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 26 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.36 8.51 5.53 -40.82 -0.23 8.29 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 31 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -32.95 274.35 -6.41 -39.36 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.32 Total: 3.98 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -1.76 Total: -13.15 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.45 Total: -48.04 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.20 Total: -3.95 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.95 -6.41 -39.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020044628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.344 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds