Wall clock time and date at job start Mon Mar 30 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 N 1.46496 * 109.47378 * 179.97438 * 8 7 6 10 10 C 1.36932 * 120.00443 * 180.02562 * 9 8 7 11 11 H 1.08006 * 120.00072 * 0.02562 * 10 9 8 12 12 C 1.38815 * 120.00368 * 180.02562 * 10 9 8 13 13 N 1.31620 * 119.99897 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99784 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47149 * 90.00334 * 14 12 10 16 16 H 1.48503 * 109.46880 * 210.00496 * 14 12 10 17 17 H 1.48498 * 109.47145 * 330.00395 * 14 12 10 18 18 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 19 19 C 1.38143 * 120.05579 * 359.44512 * 18 6 5 20 20 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 21 21 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 22 22 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 23 23 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 26 26 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 27 27 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 28 28 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 29 29 H 0.97001 * 119.99484 * 0.02562 * 9 8 7 30 30 H 0.97000 * 119.99364 * 179.97438 * 13 12 10 31 31 H 1.08001 * 119.97259 * 179.69844 * 18 6 5 32 32 H 1.07992 * 120.02912 * 180.24892 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 7 4.8813 6.7803 -1.4383 10 6 5.1910 7.3920 -2.6236 11 1 4.9449 6.9121 -3.5594 12 6 5.8211 8.6288 -2.6225 13 7 6.1183 9.2169 -3.7619 14 14 6.2460 9.4592 -1.0041 15 1 7.6061 9.0437 -0.5767 16 1 6.2111 10.9334 -1.1799 17 1 5.2586 9.0606 0.0310 18 6 1.9209 3.6048 0.0081 19 6 1.2914 2.3752 0.0014 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 4.0208 0.3801 -0.0005 24 1 5.1344 2.5752 -0.0008 25 1 3.3580 5.7459 0.5176 26 1 4.9441 4.9378 0.5160 27 1 4.8445 4.7475 -1.9543 28 1 3.2585 5.5555 -1.9527 29 1 5.1019 7.2114 -0.5978 30 1 6.5583 10.0814 -3.7611 31 1 1.3340 4.5114 0.0143 32 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020044628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:47 Heat of formation + Delta-G solvation = -27.540724 kcal Electronic energy + Delta-G solvation = -14096.068349 eV Core-core repulsion = 11635.239322 eV Total energy + Delta-G solvation = -2460.829027 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.05883 -38.82485 -36.91941 -34.21234 -32.47676 -31.97335 -29.29776 -27.87741 -25.38674 -23.59520 -23.23950 -21.86289 -19.69194 -19.04343 -17.21976 -16.84035 -16.60548 -16.08866 -15.81627 -15.50848 -15.16270 -14.72574 -14.52769 -14.22576 -13.73137 -13.58193 -12.96147 -12.79769 -12.76812 -12.30313 -12.19385 -12.04965 -11.85448 -11.68688 -11.64773 -10.98108 -9.93189 -9.32207 -9.01850 -8.03802 -5.38573 0.41508 0.45555 1.38833 1.43297 1.50772 2.40766 2.48848 2.79118 3.27382 3.58135 3.86351 3.97906 4.21899 4.22974 4.39200 4.40934 4.42863 4.49111 4.59767 4.72102 4.74633 4.82657 5.07064 5.21905 5.24726 5.33891 5.41902 5.73449 5.76847 5.84456 6.20086 6.47312 7.06585 7.81503 8.02982 9.17861 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.066111 B = 0.004729 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.431189 B = 5920.057795 C = 5975.134872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.108 3.892 4 C -0.161 4.161 5 C -0.081 4.081 6 C -0.121 4.121 7 C -0.075 4.075 8 C 0.162 3.838 9 N -0.760 5.760 10 C -0.242 4.242 11 H 0.052 0.948 12 C -0.065 4.065 13 N -0.985 5.985 14 Si 0.961 3.039 15 H -0.275 1.275 16 H -0.294 1.294 17 H -0.248 1.248 18 C -0.083 4.083 19 C -0.207 4.207 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.119 0.881 23 H 0.140 0.860 24 H 0.139 0.861 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.368 0.632 30 H 0.259 0.741 31 H 0.135 0.865 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -17.485 12.756 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.063 3.937 4 C -0.179 4.179 5 C -0.099 4.099 6 C -0.122 4.122 7 C -0.113 4.113 8 C 0.036 3.964 9 N -0.406 5.406 10 C -0.373 4.373 11 H 0.070 0.930 12 C -0.256 4.256 13 N -0.635 5.635 14 Si 0.787 3.213 15 H -0.201 1.201 16 H -0.220 1.220 17 H -0.173 1.173 18 C -0.101 4.101 19 C -0.226 4.226 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.137 0.863 23 H 0.158 0.842 24 H 0.157 0.843 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.202 0.798 30 H 0.068 0.932 31 H 0.153 0.847 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.143 -17.682 12.528 24.368 hybrid contribution 0.209 0.955 0.225 1.003 sum -10.934 -16.727 12.753 23.706 Atomic orbital electron populations 1.23324 0.76619 1.05508 1.02157 1.86033 1.23354 1.26746 1.88830 1.19214 0.92680 0.84667 0.97135 1.20608 0.91800 0.98903 1.06604 1.21078 1.00650 0.90916 0.97300 1.19775 0.94077 0.94794 1.03526 1.20603 1.01076 0.93681 0.95916 1.20724 0.94660 0.85336 0.95707 1.42724 1.72954 1.20894 1.03995 1.19049 1.31162 1.00746 0.86363 0.92987 1.25595 1.01194 0.98182 1.00659 1.69902 1.48702 1.17984 1.26925 0.85325 0.78931 0.77212 0.79821 1.20134 1.22042 1.17274 1.21085 0.93942 0.97958 0.97162 1.21423 1.01042 0.91728 1.08380 0.91686 0.92077 0.86255 0.84189 0.84291 0.90320 0.90153 0.96131 0.96268 0.79822 0.93200 0.84730 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.14 10.50 -92.47 -0.97 -8.11 16 3 C 0.11 2.55 6.69 22.51 0.15 2.71 16 4 C -0.16 -3.85 9.99 22.37 0.22 -3.62 16 5 C -0.08 -2.05 9.69 22.25 0.22 -1.83 16 6 C -0.12 -3.26 5.14 -19.85 -0.10 -3.36 16 7 C -0.08 -2.24 5.46 29.85 0.16 -2.07 16 8 C 0.16 6.41 6.24 86.38 0.54 6.95 16 9 N -0.76 -36.65 5.41 -343.45 -1.86 -38.51 16 10 C -0.24 -14.34 10.47 84.04 0.88 -13.46 16 11 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 12 C -0.06 -3.90 5.50 84.86 0.47 -3.44 16 13 N -0.98 -64.25 13.97 21.65 0.30 -63.95 16 14 Si 0.96 45.68 27.74 68.60 1.90 47.58 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 16 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 17 H -0.25 -10.53 6.52 99.48 0.65 -9.89 16 18 C -0.08 -2.05 9.69 22.25 0.22 -1.83 16 19 C -0.21 -4.56 9.04 22.37 0.20 -4.36 16 20 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 21 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 22 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 24 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 25 H 0.08 2.21 8.08 -2.39 -0.02 2.19 16 26 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.37 16.53 5.53 -92.71 -0.51 16.02 16 30 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 31 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.15 2.44 6.30 -2.91 -0.02 2.42 16 Total: -1.00 -70.97 274.35 3.98 -66.99 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.53 Total: 18.97 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 4.07 Total: -22.99 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -1.55 Total: -102.46 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.97 Total: -8.11 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.90 Total: 47.58 kcal Total: -70.97 3.98 -66.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020044628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.452 kcal (2) G-P(sol) polarization free energy of solvation -70.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds