Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36002 * 116.99947 * 2 1 4 4 C 1.38702 * 119.97897 * 180.02562 * 3 2 1 5 5 C 1.38106 * 120.02064 * 180.02562 * 4 3 2 6 6 C 1.38864 * 119.97742 * 359.97438 * 5 4 3 7 7 N 1.39942 * 120.01613 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99708 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47300 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99822 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00339 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00355 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 89.99890 * 14 12 10 16 16 H 1.48501 * 109.47062 * 209.99841 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99640 * 14 12 10 18 18 C 1.38861 * 119.96179 * 0.26979 * 6 5 4 19 19 C 1.38108 * 119.98073 * 359.47741 * 18 6 5 20 20 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46883 * 299.99816 * 1 2 3 22 22 H 1.08998 * 109.46920 * 59.99548 * 1 2 3 23 23 H 1.08001 * 119.99072 * 0.02562 * 4 3 2 24 24 H 1.07992 * 120.01448 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00212 * 359.97438 * 7 6 5 26 26 H 1.09004 * 109.47073 * 299.99487 * 8 7 6 27 27 H 1.09000 * 109.47212 * 59.99569 * 8 7 6 28 28 H 1.09004 * 109.46930 * 299.99770 * 9 8 7 29 29 H 1.09004 * 109.47059 * 59.99372 * 9 8 7 30 30 H 0.96991 * 119.99886 * 180.02562 * 13 12 10 31 31 H 1.08006 * 120.00696 * 179.70598 * 18 6 5 32 32 H 1.07993 * 119.99058 * 180.25441 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0595 2.5140 0.0000 6 6 3.3036 3.6788 0.0005 7 7 3.9389 4.9257 0.0005 8 6 3.1410 6.1544 0.0005 9 6 4.0730 7.3678 0.0012 10 6 3.2523 8.6316 0.0005 11 1 2.1738 8.5751 -0.0007 12 6 3.8783 9.8601 0.0015 13 7 3.1620 10.9631 0.0004 14 14 5.7437 9.9579 0.0029 15 1 6.2390 9.9843 -1.3968 16 1 6.1741 11.1943 0.7037 17 1 6.3009 8.7726 0.7029 18 6 1.9169 3.6057 0.0062 19 6 1.2907 2.3747 0.0004 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 4.0194 0.3778 -0.0014 24 1 5.1380 2.5700 0.0000 25 1 4.9076 4.9765 0.0005 26 1 2.5122 6.1793 -0.8895 27 1 2.5121 6.1792 0.8905 28 1 4.7015 7.3427 0.8915 29 1 4.7023 7.3430 -0.8885 30 1 3.6024 11.8273 0.0007 31 1 1.3282 4.5112 0.0114 32 1 0.2123 2.3177 0.0006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020056133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = -18.582925 kcal Electronic energy + Delta-G solvation = -14083.574825 eV Core-core repulsion = 11623.134238 eV Total energy + Delta-G solvation = -2460.440587 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88675 -37.84434 -35.15199 -32.88474 -30.88451 -30.58414 -28.21447 -26.69631 -24.59974 -22.52052 -21.24498 -20.45435 -18.00803 -17.07236 -16.64227 -15.72822 -15.61038 -14.50056 -14.41820 -14.27662 -14.11852 -13.37126 -12.95052 -12.68872 -12.60520 -12.39677 -11.81069 -11.61472 -11.47758 -11.02921 -10.57305 -10.36697 -10.07472 -9.93469 -9.36614 -9.15449 -8.80870 -8.63395 -6.78702 -6.13877 -4.13957 1.53269 1.87451 3.24535 3.32448 3.34279 3.44049 3.97749 4.06776 4.36374 4.94716 5.03896 5.12213 5.15313 5.19756 5.39262 5.52121 5.58590 5.78539 6.00636 6.14911 6.15214 6.30621 6.50216 6.57407 6.61727 6.82224 7.03283 7.22770 7.52501 7.60811 7.83229 8.17221 8.42200 8.89152 9.46925 10.99122 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.064855 B = 0.004793 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.627253 B = 5840.021153 C = 6245.898102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.050 3.950 4 C -0.101 4.101 5 C -0.169 4.169 6 C 0.197 3.803 7 N -0.747 5.747 8 C 0.135 3.865 9 C -0.021 4.021 10 C -0.523 4.523 11 H 0.074 0.926 12 C 0.070 3.930 13 N -0.899 5.899 14 Si 0.882 3.118 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.266 1.266 18 C -0.163 4.163 19 C -0.154 4.154 20 H 0.093 0.907 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.395 0.605 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.127 0.873 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 -18.588 0.024 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.241 6.241 3 C 0.004 3.996 4 C -0.120 4.120 5 C -0.192 4.192 6 C 0.092 3.908 7 N -0.375 5.375 8 C 0.012 3.988 9 C -0.059 4.059 10 C -0.562 4.562 11 H 0.093 0.907 12 C -0.132 4.132 13 N -0.537 5.537 14 Si 0.709 3.291 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.191 1.191 18 C -0.186 4.186 19 C -0.173 4.173 20 H 0.111 0.889 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.142 0.858 24 H 0.142 0.858 25 H 0.229 0.771 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.551 -18.380 0.027 18.445 hybrid contribution 1.011 0.485 -0.020 1.122 sum -0.540 -17.895 0.007 17.903 Atomic orbital electron populations 1.22923 0.79324 1.03147 1.01058 1.86009 1.20551 1.27259 1.90245 1.18691 0.92176 0.83855 1.04879 1.20055 0.91206 0.97588 1.03164 1.20387 0.99220 0.90483 1.09139 1.17908 0.91922 0.86086 0.94933 1.45146 1.08406 1.02744 1.81181 1.21440 0.94683 0.82597 1.00105 1.19748 0.95935 0.93387 0.96843 1.20917 0.94948 0.88570 1.51749 0.90744 1.24995 0.98339 0.95610 0.94303 1.69898 1.35707 0.97687 1.50444 0.86749 0.86058 0.77731 0.78543 1.20212 1.21246 1.19084 1.20533 0.92829 0.97668 1.07585 1.20961 0.99394 0.91871 1.05076 0.88902 0.93074 0.93080 0.85794 0.85832 0.77108 0.92891 0.92875 0.96041 0.96484 0.92534 0.85543 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.33 -4.21 10.50 -19.75 -0.21 -4.42 16 3 C 0.05 0.70 6.69 -39.24 -0.26 0.43 16 4 C -0.10 -1.37 9.98 -39.46 -0.39 -1.76 16 5 C -0.17 -2.37 9.89 -39.40 -0.39 -2.76 16 6 C 0.20 3.11 6.66 -83.69 -0.56 2.56 16 7 N -0.75 -12.51 5.74 -58.58 -0.34 -12.85 16 8 C 0.13 2.63 4.85 -4.04 -0.02 2.61 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C -0.52 -14.52 9.66 -34.44 -0.33 -14.86 16 11 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 14 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 18 C -0.16 -2.53 9.31 -39.40 -0.37 -2.89 16 19 C -0.15 -2.13 9.03 -39.46 -0.36 -2.49 16 20 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 22 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 23 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 24 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 25 H 0.40 6.07 8.49 -40.82 -0.35 5.72 16 26 H 0.05 1.05 7.96 -51.93 -0.41 0.63 16 27 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 28 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 29 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.13 1.96 6.73 -52.48 -0.35 1.60 16 32 H 0.12 1.41 6.29 -52.49 -0.33 1.08 16 LS Contribution 271.97 15.07 4.10 4.10 Total: -1.00 -30.48 271.97 -6.51 -36.99 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.27 Total: 2.69 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.90 Total: -16.60 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.44 Total: -39.29 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.21 Total: -4.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.48 -6.51 -36.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020056133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.405 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds