Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36002 * 116.99947 * 2 1 4 4 C 1.38702 * 119.97897 * 180.02562 * 3 2 1 5 5 C 1.38106 * 120.02064 * 180.02562 * 4 3 2 6 6 C 1.38864 * 119.97742 * 359.97438 * 5 4 3 7 7 N 1.39942 * 120.01613 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99708 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47300 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99822 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00339 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00355 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 89.99890 * 14 12 10 16 16 H 1.48501 * 109.47062 * 209.99841 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99640 * 14 12 10 18 18 C 1.38861 * 119.96179 * 0.26979 * 6 5 4 19 19 C 1.38108 * 119.98073 * 359.47741 * 18 6 5 20 20 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46883 * 299.99816 * 1 2 3 22 22 H 1.08998 * 109.46920 * 59.99548 * 1 2 3 23 23 H 1.08001 * 119.99072 * 0.02562 * 4 3 2 24 24 H 1.07992 * 120.01448 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00212 * 359.97438 * 7 6 5 26 26 H 1.09004 * 109.47073 * 299.99487 * 8 7 6 27 27 H 1.09000 * 109.47212 * 59.99569 * 8 7 6 28 28 H 1.09004 * 109.46930 * 299.99770 * 9 8 7 29 29 H 1.09004 * 109.47059 * 59.99372 * 9 8 7 30 30 H 0.96991 * 119.99886 * 180.02562 * 13 12 10 31 31 H 1.08006 * 120.00696 * 179.70598 * 18 6 5 32 32 H 1.07993 * 119.99058 * 180.25441 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0595 2.5140 0.0000 6 6 3.3036 3.6788 0.0005 7 7 3.9389 4.9257 0.0005 8 6 3.1410 6.1544 0.0005 9 6 4.0730 7.3678 0.0012 10 6 3.2523 8.6316 0.0005 11 1 2.1738 8.5751 -0.0007 12 6 3.8783 9.8601 0.0015 13 7 3.1620 10.9631 0.0004 14 14 5.7437 9.9579 0.0029 15 1 6.2390 9.9843 -1.3968 16 1 6.1741 11.1943 0.7037 17 1 6.3009 8.7726 0.7029 18 6 1.9169 3.6057 0.0062 19 6 1.2907 2.3747 0.0004 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 4.0194 0.3778 -0.0014 24 1 5.1380 2.5700 0.0000 25 1 4.9076 4.9765 0.0005 26 1 2.5122 6.1793 -0.8895 27 1 2.5121 6.1792 0.8905 28 1 4.7015 7.3427 0.8915 29 1 4.7023 7.3430 -0.8885 30 1 3.6024 11.8273 0.0007 31 1 1.3282 4.5112 0.0114 32 1 0.2123 2.3177 0.0006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020056133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = -38.429938 kcal Electronic energy + Delta-G solvation = -14084.435456 eV Core-core repulsion = 11623.134238 eV Total energy + Delta-G solvation = -2461.301218 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93253 -38.95448 -36.58678 -34.81436 -32.30155 -31.94247 -29.40466 -27.73472 -26.23887 -23.83853 -22.46526 -22.01888 -19.14676 -18.91340 -17.92970 -16.90398 -16.49302 -16.25804 -15.85556 -15.73386 -15.37275 -14.69992 -14.36650 -14.05712 -13.90309 -13.51838 -13.28915 -13.08452 -12.64618 -12.42916 -11.96104 -11.91718 -11.75766 -11.63300 -11.44005 -10.80335 -10.36929 -9.89614 -8.31879 -7.98703 -6.37951 0.44377 0.74842 1.36894 1.38600 1.49943 2.34679 2.52561 2.69664 2.95506 3.03528 3.94614 4.02861 4.30540 4.39145 4.45888 4.47199 4.47811 4.61839 4.67836 4.78103 4.79511 5.05164 5.16670 5.28845 5.42436 5.42762 5.50965 5.57346 5.77392 6.20165 6.40346 6.62898 6.68878 6.99779 7.27014 8.84583 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.064855 B = 0.004793 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.627253 B = 5840.021153 C = 6245.898102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.338 6.338 3 C 0.048 3.952 4 C -0.107 4.107 5 C -0.162 4.162 6 C 0.174 3.826 7 N -0.746 5.746 8 C 0.152 3.848 9 C -0.015 4.015 10 C -0.536 4.536 11 H 0.035 0.965 12 C 0.007 3.993 13 N -0.949 5.949 14 Si 0.954 3.046 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.244 1.244 18 C -0.180 4.180 19 C -0.158 4.158 20 H 0.118 0.882 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.403 0.597 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.268 0.732 31 H 0.117 0.883 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -20.701 0.023 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.002 3.998 4 C -0.126 4.126 5 C -0.184 4.184 6 C 0.070 3.930 7 N -0.377 5.377 8 C 0.028 3.972 9 C -0.052 4.052 10 C -0.574 4.574 11 H 0.053 0.947 12 C -0.191 4.191 13 N -0.589 5.589 14 Si 0.777 3.223 15 H -0.192 1.192 16 H -0.211 1.211 17 H -0.167 1.167 18 C -0.203 4.203 19 C -0.177 4.177 20 H 0.136 0.864 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.163 0.837 24 H 0.164 0.836 25 H 0.238 0.762 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.027 -20.547 0.026 20.547 hybrid contribution 0.365 1.020 -0.021 1.084 sum 0.338 -19.526 0.005 19.529 Atomic orbital electron populations 1.23225 0.77330 1.05134 1.01664 1.86003 1.22659 1.26600 1.89984 1.18919 0.92686 0.84301 1.03847 1.20379 0.91438 0.98266 1.02487 1.20621 1.00307 0.89806 1.07700 1.18097 0.92241 0.86156 0.96460 1.44823 1.08465 1.02064 1.82361 1.20986 0.93986 0.82924 0.99301 1.19617 0.95882 0.92390 0.97350 1.21267 0.93893 0.91034 1.51208 0.94659 1.26003 1.04201 0.95031 0.93838 1.70055 1.38220 0.98504 1.52105 0.85601 0.78990 0.78473 0.79202 1.19153 1.21073 1.16730 1.20626 0.93086 0.98076 1.08519 1.21141 1.00521 0.91313 1.04751 0.86360 0.92448 0.92454 0.83670 0.83639 0.76171 0.93851 0.93862 0.95342 0.95477 0.92335 0.86546 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -7.93 10.50 -93.57 -0.98 -8.91 16 3 C 0.05 1.26 6.69 22.49 0.15 1.41 16 4 C -0.11 -2.63 9.98 22.35 0.22 -2.41 16 5 C -0.16 -4.15 9.89 22.39 0.22 -3.93 16 6 C 0.17 5.29 6.66 38.15 0.25 5.55 16 7 N -0.75 -24.14 5.74 -339.24 -1.95 -26.09 16 8 C 0.15 5.96 4.85 86.38 0.42 6.38 16 9 C -0.01 -0.66 4.16 29.85 0.12 -0.53 16 10 C -0.54 -30.33 9.66 25.60 0.25 -30.09 16 11 H 0.04 2.20 7.99 -2.91 -0.02 2.17 16 12 C 0.01 0.38 5.47 84.65 0.46 0.84 16 13 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 14 Si 0.95 43.11 27.47 68.60 1.88 45.00 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 18 C -0.18 -5.50 9.31 22.39 0.21 -5.30 16 19 C -0.16 -4.18 9.03 22.35 0.20 -3.98 16 20 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 22 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 23 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 24 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 25 H 0.40 11.55 8.49 -92.71 -0.79 10.76 16 26 H 0.04 1.75 7.96 -2.38 -0.02 1.73 16 27 H 0.04 1.75 7.94 -2.39 -0.02 1.73 16 28 H 0.03 1.25 7.20 -2.38 -0.02 1.23 16 29 H 0.03 1.17 7.57 -2.39 -0.02 1.15 16 30 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.12 3.70 6.73 -2.91 -0.02 3.68 16 32 H 0.14 3.05 6.29 -2.91 -0.02 3.03 16 Total: -1.00 -65.77 271.97 3.15 -62.62 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.27 Total: 16.54 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 3.62 Total: -30.61 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.65 Total: -84.63 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.98 Total: -8.91 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 45.00 kcal Total: -65.77 3.15 -62.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020056133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.188 kcal (2) G-P(sol) polarization free energy of solvation -65.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds