Wall clock time and date at job start Mon Mar 30 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00009 * 2 1 4 4 C 1.50705 * 109.47071 * 293.95565 * 3 2 1 5 5 H 1.07994 * 120.00346 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99562 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00431 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99732 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47060 * 90.00295 * 8 6 4 10 10 H 1.48502 * 109.47058 * 209.99724 * 8 6 4 11 11 H 1.48493 * 109.47177 * 330.00029 * 8 6 4 12 12 C 1.39670 * 110.99951 * 123.95580 * 2 1 3 13 13 C 1.38929 * 120.07513 * 296.04434 * 12 2 1 14 14 C 1.38085 * 119.92665 * 179.97438 * 13 12 2 15 15 C 1.38305 * 120.07269 * 0.02562 * 14 13 12 16 16 C 1.38262 * 120.14953 * 0.02562 * 15 14 13 17 17 C 1.38127 * 120.07686 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.03676 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.47348 * 0.02562 * 18 17 16 20 20 H 1.09000 * 109.46886 * 296.04564 * 1 2 3 21 21 H 1.09006 * 109.47136 * 56.04606 * 1 2 3 22 22 H 1.08995 * 109.47341 * 176.04281 * 1 2 3 23 23 H 1.09005 * 109.46956 * 53.95587 * 3 2 1 24 24 H 1.09000 * 109.47296 * 173.95408 * 3 2 1 25 25 H 0.96999 * 119.99639 * 179.97438 * 7 6 4 26 26 H 1.07998 * 120.03900 * 0.25670 * 13 12 2 27 27 H 1.07995 * 119.96098 * 180.02562 * 14 13 12 28 28 H 1.07998 * 119.92257 * 179.97438 * 15 14 13 29 29 H 1.08001 * 119.96247 * 180.02562 * 16 15 14 30 30 H 1.09009 * 109.47038 * 120.00017 * 18 17 16 31 31 H 1.09000 * 109.47203 * 239.99567 * 18 17 16 32 32 H 0.96699 * 114.00261 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5113 -2.0488 6 6 2.0277 3.3491 -1.5288 7 7 2.7129 4.0016 -0.6153 8 14 1.5839 4.1865 -3.1386 9 1 0.2718 4.8675 -2.9970 10 1 2.6266 5.1873 -3.4799 11 1 1.5004 3.1706 -4.2184 12 6 1.9695 -0.7283 1.0816 13 6 1.7262 -0.3011 2.3810 14 6 2.2221 -1.0238 3.4480 15 6 2.9607 -2.1715 3.2243 16 6 3.2056 -2.5989 1.9324 17 6 2.7125 -1.8807 0.8605 18 6 2.9795 -2.3477 -0.5472 19 8 3.7569 -3.5462 -0.5121 20 1 -0.3633 0.4512 0.9233 21 1 -0.3634 0.5740 -0.8525 22 1 -0.3634 -1.0252 -0.0709 23 1 1.5611 1.9273 0.8310 24 1 3.0797 1.3444 0.1082 25 1 2.9881 4.9174 -0.7776 26 1 1.1461 0.5928 2.5564 27 1 2.0329 -0.6924 4.4583 28 1 3.3477 -2.7346 4.0606 29 1 3.7823 -3.4958 1.7612 30 1 2.0327 -2.5438 -1.0507 31 1 3.5258 -1.5755 -1.0887 32 1 3.9672 -3.9043 -1.3854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020435016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:05 Heat of formation + Delta-G solvation = -19.296514 kcal Electronic energy + Delta-G solvation = -14890.017684 eV Core-core repulsion = 12429.546153 eV Total energy + Delta-G solvation = -2460.471531 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.46222 -36.51624 -35.75314 -32.61167 -31.13759 -29.41302 -27.23206 -25.72303 -24.72140 -22.58384 -20.85085 -20.00116 -17.07410 -16.60337 -16.08046 -15.10895 -14.78820 -14.56243 -14.42385 -13.59997 -13.50242 -13.37002 -12.85561 -12.08709 -11.91953 -11.86456 -11.42369 -11.00369 -10.92598 -10.77971 -10.55387 -10.52272 -10.02173 -9.98715 -9.31546 -8.50066 -8.33025 -8.01014 -7.47836 -6.07503 -4.10011 1.76504 1.82693 3.28435 3.34947 3.38666 4.16590 4.37749 4.48568 4.87798 5.27991 5.30644 5.37682 5.50961 5.76764 5.86774 5.99760 6.01509 6.09644 6.21878 6.32477 6.48856 6.65275 6.80170 6.89425 7.01078 7.17091 7.29885 7.42390 7.78463 7.86980 8.00786 8.11136 8.55573 8.96771 9.54242 11.03146 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.007811 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.764733 B = 3583.777070 C = 3981.073701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.515 5.515 3 C 0.199 3.801 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.116 3.884 13 C -0.150 4.150 14 C -0.116 4.116 15 C -0.141 4.141 16 C -0.098 4.098 17 C -0.078 4.078 18 C 0.130 3.870 19 O -0.580 6.580 20 H 0.017 0.983 21 H 0.080 0.920 22 H 0.046 0.954 23 H -0.003 1.003 24 H 0.030 0.970 25 H 0.262 0.738 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 -11.180 3.199 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.236 5.236 3 C 0.076 3.924 4 C -0.550 4.550 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.022 3.978 13 C -0.170 4.170 14 C -0.135 4.135 15 C -0.159 4.159 16 C -0.117 4.117 17 C -0.079 4.079 18 C 0.054 3.946 19 O -0.386 6.386 20 H 0.036 0.964 21 H 0.099 0.901 22 H 0.065 0.935 23 H 0.015 0.985 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.138 0.862 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.146 0.854 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.806 -11.096 3.418 11.639 hybrid contribution -0.406 1.077 -0.599 1.297 sum -1.213 -10.020 2.819 10.479 Atomic orbital electron populations 1.22237 0.87186 0.99919 1.01088 1.59904 1.07540 1.18294 1.37896 1.19796 0.95496 0.80159 0.96959 1.21131 1.35207 0.96999 1.01642 0.91699 1.24997 0.95181 0.97315 0.97061 1.69968 1.37999 1.11479 1.34084 0.86479 0.78021 0.79236 0.83570 1.20695 1.21212 1.19751 1.18887 0.95927 0.93227 0.89797 1.21718 1.01656 1.00325 0.93308 1.20973 0.98564 0.95565 0.98360 1.21031 1.00692 0.97498 0.96702 1.20852 0.99400 0.99824 0.91584 1.19595 0.98728 0.94810 0.94729 1.20684 0.94534 0.85567 0.93860 1.86365 1.75158 1.43021 1.34038 0.96405 0.90119 0.93500 0.98547 0.95144 0.92826 0.86228 0.86757 0.86681 0.85444 0.92177 0.91391 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 9.20 60.07 0.55 1.38 16 2 N -0.51 -11.23 4.09 -180.32 -0.74 -11.97 16 3 C 0.20 5.20 4.30 -4.97 -0.02 5.18 16 4 C -0.51 -14.13 8.46 -34.44 -0.29 -14.42 16 5 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.12 2.33 4.66 -83.79 -0.39 1.94 16 13 C -0.15 -2.81 8.66 -39.38 -0.34 -3.15 16 14 C -0.12 -1.86 10.04 -39.61 -0.40 -2.26 16 15 C -0.14 -2.15 10.04 -39.55 -0.40 -2.55 16 16 C -0.10 -1.62 9.37 -39.61 -0.37 -2.00 16 17 C -0.08 -1.43 5.90 -104.42 -0.62 -2.04 16 18 C 0.13 2.15 6.85 36.00 0.25 2.39 16 19 O -0.58 -8.16 12.14 -35.23 -0.43 -8.59 16 20 H 0.02 0.33 7.34 -51.93 -0.38 -0.05 16 21 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.00 -0.09 7.48 -51.93 -0.39 -0.48 16 24 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.12 2.27 7.14 -52.49 -0.37 1.90 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.13 1.96 7.00 -52.49 -0.37 1.59 16 30 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.38 3.43 9.12 45.56 0.42 3.84 16 LS Contribution 272.18 15.07 4.10 4.10 Total: -1.00 -30.76 272.18 -6.96 -37.72 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.49 Total: 2.22 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.12 Total: -14.04 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.00 Total: -37.73 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.43 Total: -8.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.76 -6.96 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020435016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.423 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds