Wall clock time and date at job start Mon Mar 30 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00009 * 2 1 4 4 C 1.50705 * 109.47071 * 293.95565 * 3 2 1 5 5 H 1.07994 * 120.00346 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99562 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00431 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99732 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47060 * 90.00295 * 8 6 4 10 10 H 1.48502 * 109.47058 * 209.99724 * 8 6 4 11 11 H 1.48493 * 109.47177 * 330.00029 * 8 6 4 12 12 C 1.39670 * 110.99951 * 123.95580 * 2 1 3 13 13 C 1.38929 * 120.07513 * 296.04434 * 12 2 1 14 14 C 1.38085 * 119.92665 * 179.97438 * 13 12 2 15 15 C 1.38305 * 120.07269 * 0.02562 * 14 13 12 16 16 C 1.38262 * 120.14953 * 0.02562 * 15 14 13 17 17 C 1.38127 * 120.07686 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.03676 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.47348 * 0.02562 * 18 17 16 20 20 H 1.09000 * 109.46886 * 296.04564 * 1 2 3 21 21 H 1.09006 * 109.47136 * 56.04606 * 1 2 3 22 22 H 1.08995 * 109.47341 * 176.04281 * 1 2 3 23 23 H 1.09005 * 109.46956 * 53.95587 * 3 2 1 24 24 H 1.09000 * 109.47296 * 173.95408 * 3 2 1 25 25 H 0.96999 * 119.99639 * 179.97438 * 7 6 4 26 26 H 1.07998 * 120.03900 * 0.25670 * 13 12 2 27 27 H 1.07995 * 119.96098 * 180.02562 * 14 13 12 28 28 H 1.07998 * 119.92257 * 179.97438 * 15 14 13 29 29 H 1.08001 * 119.96247 * 180.02562 * 16 15 14 30 30 H 1.09009 * 109.47038 * 120.00017 * 18 17 16 31 31 H 1.09000 * 109.47203 * 239.99567 * 18 17 16 32 32 H 0.96699 * 114.00261 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5113 -2.0488 6 6 2.0277 3.3491 -1.5288 7 7 2.7129 4.0016 -0.6153 8 14 1.5839 4.1865 -3.1386 9 1 0.2718 4.8675 -2.9970 10 1 2.6266 5.1873 -3.4799 11 1 1.5004 3.1706 -4.2184 12 6 1.9695 -0.7283 1.0816 13 6 1.7262 -0.3011 2.3810 14 6 2.2221 -1.0238 3.4480 15 6 2.9607 -2.1715 3.2243 16 6 3.2056 -2.5989 1.9324 17 6 2.7125 -1.8807 0.8605 18 6 2.9795 -2.3477 -0.5472 19 8 3.7569 -3.5462 -0.5121 20 1 -0.3633 0.4512 0.9233 21 1 -0.3634 0.5740 -0.8525 22 1 -0.3634 -1.0252 -0.0709 23 1 1.5611 1.9273 0.8310 24 1 3.0797 1.3444 0.1082 25 1 2.9881 4.9174 -0.7776 26 1 1.1461 0.5928 2.5564 27 1 2.0329 -0.6924 4.4583 28 1 3.3477 -2.7346 4.0606 29 1 3.7823 -3.4958 1.7612 30 1 2.0327 -2.5438 -1.0507 31 1 3.5258 -1.5755 -1.0887 32 1 3.9672 -3.9043 -1.3854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020435016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:04 Heat of formation + Delta-G solvation = -40.678238 kcal Electronic energy + Delta-G solvation = -14890.944865 eV Core-core repulsion = 12429.546153 eV Total energy + Delta-G solvation = -2461.398712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89573 -37.87562 -37.18922 -34.70371 -32.45545 -30.92782 -29.18194 -27.16132 -26.32789 -24.36491 -22.30198 -21.50788 -18.67887 -18.14221 -17.67429 -16.80547 -16.38367 -16.04718 -15.86377 -15.24165 -14.97230 -14.66682 -14.52199 -14.02747 -13.44141 -13.21966 -13.04034 -12.80036 -12.70604 -12.41242 -12.12416 -12.09121 -11.85483 -11.35954 -11.18359 -10.65253 -9.69508 -9.40095 -9.23940 -8.22831 -6.34270 0.40324 0.46346 1.41060 1.42540 1.54229 2.38688 2.81931 3.09514 3.21681 3.35624 4.01819 4.15508 4.22041 4.37573 4.52462 4.55645 4.66102 4.67758 4.77708 4.89760 5.01457 5.11137 5.17617 5.21962 5.51448 5.58576 5.60498 5.72776 6.00603 6.08445 6.14752 6.77033 6.80738 6.93943 7.35628 8.88375 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.007811 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.764733 B = 3583.777070 C = 3981.073701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.514 5.514 3 C 0.220 3.780 4 C -0.526 4.526 5 H 0.069 0.931 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.973 3.027 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.262 1.262 12 C 0.081 3.919 13 C -0.168 4.168 14 C -0.114 4.114 15 C -0.128 4.128 16 C -0.100 4.100 17 C -0.094 4.094 18 C 0.140 3.860 19 O -0.581 6.581 20 H 0.016 0.984 21 H 0.070 0.930 22 H 0.073 0.927 23 H -0.032 1.032 24 H -0.006 1.006 25 H 0.265 0.735 26 H 0.104 0.896 27 H 0.144 0.856 28 H 0.155 0.845 29 H 0.144 0.856 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -12.603 3.197 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.235 5.235 3 C 0.096 3.904 4 C -0.564 4.564 5 H 0.087 0.913 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.797 3.203 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.186 1.186 12 C -0.013 4.013 13 C -0.188 4.188 14 C -0.132 4.132 15 C -0.146 4.146 16 C -0.118 4.118 17 C -0.095 4.095 18 C 0.063 3.937 19 O -0.390 6.390 20 H 0.034 0.966 21 H 0.089 0.911 22 H 0.092 0.908 23 H -0.014 1.014 24 H 0.012 0.988 25 H 0.074 0.926 26 H 0.123 0.877 27 H 0.162 0.838 28 H 0.173 0.827 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.925 -12.558 3.406 13.044 hybrid contribution -0.328 1.410 -0.502 1.532 sum -1.252 -11.148 2.904 11.587 Atomic orbital electron populations 1.22240 0.85969 1.01389 1.00493 1.59752 1.08693 1.15595 1.39463 1.19345 0.93062 0.82499 0.95530 1.21452 1.35202 0.97543 1.02184 0.91287 1.25961 0.94840 0.98029 1.00854 1.70107 1.39108 1.11916 1.36338 0.85326 0.77930 0.78091 0.78935 1.19697 1.20872 1.18642 1.19031 0.98101 0.94429 0.89729 1.21742 1.02570 1.00552 0.93937 1.21306 0.97668 0.95343 0.98891 1.21484 0.98886 0.96791 0.97422 1.21124 0.98995 1.00025 0.91678 1.19856 0.98563 0.94674 0.96364 1.20425 0.94660 0.85871 0.92740 1.86305 1.74701 1.41813 1.36180 0.96562 0.91148 0.90794 1.01403 0.98835 0.92638 0.87744 0.83787 0.82704 0.83877 0.91798 0.93498 0.75013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.81 9.20 127.69 1.17 2.98 16 2 N -0.51 -23.09 4.09 -724.42 -2.96 -26.05 16 3 C 0.22 12.06 4.30 85.56 0.37 12.43 16 4 C -0.53 -29.77 8.46 25.60 0.22 -29.56 16 5 H 0.07 3.77 7.12 -2.91 -0.02 3.75 16 6 C 0.00 0.08 5.46 84.65 0.46 0.54 16 7 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 8 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 12 C 0.08 3.31 4.66 38.21 0.18 3.49 16 13 C -0.17 -6.36 8.66 22.40 0.19 -6.16 16 14 C -0.11 -3.42 10.04 22.25 0.22 -3.20 16 15 C -0.13 -3.49 10.04 22.29 0.22 -3.26 16 16 C -0.10 -3.08 9.37 22.25 0.21 -2.87 16 17 C -0.09 -3.38 5.90 -19.74 -0.12 -3.50 16 18 C 0.14 4.55 6.85 71.23 0.49 5.04 16 19 O -0.58 -15.23 12.14 -148.98 -1.81 -17.04 16 20 H 0.02 0.63 7.34 -2.39 -0.02 0.61 16 21 H 0.07 2.88 6.76 -2.38 -0.02 2.86 16 22 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 23 H -0.03 -1.87 7.48 -2.38 -0.02 -1.89 16 24 H -0.01 -0.40 8.06 -2.39 -0.02 -0.42 16 25 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.10 4.16 7.14 -2.91 -0.02 4.14 16 27 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.14 3.95 7.00 -2.91 -0.02 3.93 16 30 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.40 6.39 9.12 -74.06 -0.68 5.72 16 Total: -1.00 -67.26 272.18 1.60 -65.66 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.44 Total: 11.91 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.62 Total: -24.08 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -2.68 Total: -82.45 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.81 Total: -17.04 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.26 1.60 -65.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020435016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.983 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds