Wall clock time and date at job start Mon Mar 30 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36015 * 117.00176 * 2 1 4 4 C 1.38508 * 120.07503 * 0.02562 * 3 2 1 5 5 C 1.38287 * 120.01326 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.18343 * 359.97438 * 5 4 3 7 7 C 1.38226 * 120.16239 * 0.02562 * 6 5 4 8 8 C 1.38731 * 119.97282 * 359.75830 * 7 6 5 9 9 N 1.39973 * 120.08576 * 180.23438 * 8 7 6 10 10 C 1.46501 * 119.99870 * 0.25846 * 9 8 7 11 11 H 1.09000 * 109.47359 * 34.99481 * 10 9 8 12 12 C 1.53002 * 109.47022 * 274.99758 * 10 9 8 13 13 C 1.50701 * 109.46978 * 155.00184 * 10 9 8 14 14 H 1.07996 * 119.99730 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99798 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00105 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 119.99646 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47239 * 60.00066 * 17 15 13 19 19 H 1.48507 * 109.46896 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47233 * 299.99334 * 17 15 13 21 21 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47220 * 299.99847 * 1 2 3 23 23 H 1.08996 * 109.47672 * 59.99790 * 1 2 3 24 24 H 1.07993 * 119.99417 * 359.97438 * 4 3 2 25 25 H 1.08005 * 119.90529 * 179.97438 * 5 4 3 26 26 H 1.07997 * 119.92079 * 179.97438 * 6 5 4 27 27 H 1.07996 * 120.01368 * 180.02562 * 7 6 5 28 28 H 0.96997 * 119.99906 * 180.25579 * 9 8 7 29 29 H 1.09005 * 109.47419 * 60.00178 * 12 10 9 30 30 H 1.09000 * 109.47174 * 180.02562 * 12 10 9 31 31 H 1.09005 * 109.47253 * 300.00183 * 12 10 9 32 32 H 0.96998 * 119.99697 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2936 2.3745 0.0005 5 6 1.9228 3.6060 0.0011 6 6 3.3033 3.6812 0.0016 7 6 4.0618 2.5257 0.0011 8 6 3.4375 1.2868 0.0051 9 7 4.2033 0.1151 0.0095 10 6 5.6661 0.1962 0.0156 11 1 5.9798 1.0574 0.6055 12 6 6.1744 0.3484 -1.4194 13 6 6.2363 -1.0612 0.6198 14 1 5.5752 -1.8423 0.9650 15 6 7.6019 -1.2138 0.7327 16 7 8.4069 -0.2624 0.3127 17 14 8.3086 -2.7721 1.4822 18 1 7.8817 -3.9457 0.6786 19 1 9.7914 -2.6900 1.4883 20 1 7.8149 -2.9196 2.8749 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 0.2151 2.3193 0.0005 25 1 1.3341 4.5115 0.0011 26 1 3.7902 4.6452 0.0016 27 1 5.1400 2.5872 0.0019 28 1 3.7655 -0.7504 0.0085 29 1 5.7620 1.2579 -1.8565 30 1 7.2628 0.4083 -1.4149 31 1 5.8607 -0.5128 -2.0093 32 1 9.3676 -0.3700 0.3918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032008249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:42 Heat of formation + Delta-G solvation = -13.900930 kcal Electronic energy + Delta-G solvation = -14844.122948 eV Core-core repulsion = 12383.885387 eV Total energy + Delta-G solvation = -2460.237561 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65174 -37.08679 -35.39377 -32.70978 -29.91785 -29.56000 -27.41373 -26.65864 -25.17608 -22.08732 -21.50549 -19.82419 -17.90377 -16.79747 -15.78274 -15.50863 -15.35135 -14.70690 -14.16890 -13.73785 -13.58545 -12.89426 -12.63406 -12.34575 -11.77263 -11.67477 -11.14638 -11.05264 -10.96581 -10.88444 -10.68570 -10.52699 -10.21803 -10.02788 -9.29429 -8.99870 -8.46108 -7.98508 -6.30946 -6.11650 -4.19830 1.96245 2.21390 3.27219 3.31545 3.34199 3.69850 4.29428 4.44657 4.64206 5.19865 5.20876 5.33677 5.35976 5.53322 5.60589 5.75143 6.03961 6.20600 6.41362 6.70853 6.75505 6.88163 6.99206 7.10076 7.16682 7.35000 7.43924 7.68066 7.81429 7.93861 8.12599 8.45236 8.78354 8.99598 9.47123 10.93631 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036418 B = 0.007497 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.660884 B = 3733.744720 C = 4270.516414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.026 3.974 4 C -0.161 4.161 5 C -0.174 4.174 6 C -0.100 4.100 7 C -0.181 4.181 8 C 0.222 3.778 9 N -0.720 5.720 10 C 0.268 3.732 11 H 0.039 0.961 12 C -0.152 4.152 13 C -0.529 4.529 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.888 5.888 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.091 0.909 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.132 0.868 28 H 0.394 0.606 29 H 0.013 0.987 30 H 0.089 0.911 31 H 0.028 0.972 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.507 3.875 -1.045 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.236 6.236 3 C -0.023 4.023 4 C -0.180 4.180 5 C -0.195 4.195 6 C -0.119 4.119 7 C -0.204 4.204 8 C 0.113 3.887 9 N -0.343 5.343 10 C 0.166 3.834 11 H 0.057 0.943 12 C -0.211 4.211 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 H 0.109 0.891 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.134 0.866 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.150 0.850 28 H 0.228 0.772 29 H 0.032 0.968 30 H 0.108 0.892 31 H 0.047 0.953 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.956 3.707 -1.055 11.614 hybrid contribution -0.017 -0.968 0.368 1.036 sum -10.973 2.739 -0.687 11.330 Atomic orbital electron populations 1.22857 0.79643 1.02928 1.00573 1.85987 1.20203 1.27082 1.90326 1.18462 0.90638 0.84404 1.08760 1.20806 0.98668 0.92153 1.06421 1.20441 0.94447 0.96156 1.08451 1.20747 0.93556 0.97449 1.00124 1.20658 1.00429 0.90098 1.09247 1.17479 0.86954 0.89070 0.95234 1.45483 1.07190 1.04080 1.77581 1.18704 0.73744 0.97780 0.93221 0.94293 1.22188 1.04083 0.97013 0.97848 1.21198 0.91845 1.02856 1.40807 0.92175 1.24867 0.96771 0.96837 0.95216 1.69868 1.03719 1.32714 1.46301 0.86507 0.77797 0.83081 0.79734 1.20178 1.21119 1.20181 0.89058 0.93388 0.93419 0.86622 0.87219 0.86819 0.84996 0.77187 0.96777 0.89232 0.95282 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 9.81 101.05 0.99 1.42 16 2 O -0.32 -5.56 9.74 -19.79 -0.19 -5.75 16 3 C 0.03 0.47 6.70 -39.08 -0.26 0.21 16 4 C -0.16 -2.56 9.04 -39.46 -0.36 -2.92 16 5 C -0.17 -2.69 10.04 -39.56 -0.40 -3.09 16 6 C -0.10 -1.66 10.04 -39.58 -0.40 -2.06 16 7 C -0.18 -3.55 8.85 -39.40 -0.35 -3.90 16 8 C 0.22 4.60 6.65 -83.56 -0.56 4.05 16 9 N -0.72 -16.24 5.24 -53.15 -0.28 -16.52 16 10 C 0.27 6.75 2.25 -69.08 -0.16 6.59 16 11 H 0.04 1.06 6.50 -51.93 -0.34 0.72 16 12 C -0.15 -3.73 9.20 37.16 0.34 -3.39 16 13 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 23 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 24 H 0.12 1.51 6.30 -52.49 -0.33 1.17 16 25 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.13 2.73 6.10 -52.49 -0.32 2.41 16 28 H 0.39 8.74 7.90 -40.82 -0.32 8.42 16 29 H 0.01 0.30 7.69 -51.93 -0.40 -0.09 16 30 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 268.11 15.07 4.04 4.04 Total: -1.00 -28.50 268.11 -6.41 -34.91 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.05 Total: 7.51 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -1.53 Total: -16.06 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.35 Total: -40.62 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.19 Total: -5.75 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.50 -6.41 -34.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032008249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.009 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds