Wall clock time and date at job start Mon Mar 30 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 116.99876 * 2 1 4 4 C 1.38818 * 120.01857 * 359.97438 * 3 2 1 5 5 C 1.38180 * 120.09230 * 179.97438 * 4 3 2 6 6 C 1.38159 * 120.12725 * 0.04310 * 5 4 3 7 7 C 1.38934 * 120.03564 * 0.25774 * 6 5 4 8 8 N 1.39666 * 120.04458 * 179.70219 * 7 6 5 9 9 C 1.46505 * 119.99800 * 359.97438 * 8 7 6 10 10 H 1.08993 * 109.47488 * 324.99838 * 9 8 7 11 11 C 1.53003 * 109.46887 * 85.00329 * 9 8 7 12 12 C 1.50701 * 109.46923 * 204.99691 * 9 8 7 13 13 H 1.08003 * 120.00110 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00021 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99928 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99923 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.46967 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47059 * 120.00039 * 16 14 12 19 19 H 1.48504 * 109.46967 * 240.00202 * 16 14 12 20 20 C 1.38571 * 120.01775 * 180.02562 * 3 2 1 21 21 H 1.08999 * 109.47165 * 299.99847 * 1 2 3 22 22 H 1.09005 * 109.47278 * 60.00221 * 1 2 3 23 23 H 1.08996 * 109.46957 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.95571 * 0.02562 * 4 3 2 25 25 H 1.07993 * 119.93356 * 180.02562 * 5 4 3 26 26 H 1.08002 * 119.97743 * 179.97438 * 6 5 4 27 27 H 0.96997 * 120.00241 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.47020 * 180.02562 * 11 9 8 29 29 H 1.08997 * 109.47038 * 299.99648 * 11 9 8 30 30 H 1.09000 * 109.47263 * 59.99776 * 11 9 8 31 31 H 0.96995 * 119.99979 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.06318 * 359.96197 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 -0.0005 5 6 1.9159 3.6073 0.0000 6 6 3.2953 3.6845 0.0002 7 6 4.0569 2.5225 -0.0056 8 7 5.4513 2.6003 -0.0117 9 6 6.1120 3.9079 -0.0126 10 1 5.5219 4.6128 -0.5983 11 6 6.2362 4.4175 1.4247 12 6 7.4852 3.7765 -0.6194 13 1 7.8310 2.8152 -0.9697 14 6 8.3000 4.8835 -0.7273 15 7 7.8791 6.0540 -0.3002 16 14 10.0019 4.7207 -1.4800 17 1 10.2340 3.3090 -1.8781 18 1 10.0998 5.5954 -2.6761 19 1 11.0249 5.1281 -0.4836 20 6 3.4297 1.2839 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2117 2.3183 -0.0005 25 1 1.3255 4.5116 0.0000 26 1 3.7819 4.6487 0.0002 27 1 5.9824 1.7886 -0.0154 28 1 6.7273 5.3906 1.4240 29 1 5.2431 4.5125 1.8636 30 1 6.8264 3.7126 2.0104 31 1 8.4525 6.8327 -0.3758 32 1 4.0192 0.3789 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032008250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:45 Heat of formation + Delta-G solvation = -16.676435 kcal Electronic energy + Delta-G solvation = -14569.450217 eV Core-core repulsion = 12109.092301 eV Total energy + Delta-G solvation = -2460.357916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.64400 -37.62289 -35.10540 -32.66277 -30.47513 -29.26408 -27.47771 -26.65927 -25.23442 -22.24309 -21.55509 -19.90384 -17.73181 -16.79466 -15.84971 -15.47861 -15.27432 -14.87388 -14.81180 -13.81763 -13.05233 -12.94412 -12.64063 -12.50495 -11.96466 -11.83778 -11.31487 -11.21919 -11.03728 -10.77766 -10.54245 -10.46775 -10.25445 -10.15527 -9.30565 -9.00844 -8.51429 -7.83311 -6.58256 -6.16824 -4.24771 2.02678 2.22087 3.22054 3.30162 3.33657 3.51786 4.27126 4.45866 4.63333 5.13338 5.16052 5.24078 5.40775 5.45202 5.61995 5.94041 5.95331 6.10115 6.42014 6.71420 6.81240 6.88914 6.98621 7.04521 7.11269 7.16922 7.43764 7.65563 7.81084 7.87666 8.06728 8.35884 8.69807 8.90549 9.42496 10.89152 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058417 B = 0.005867 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.200927 B = 4771.057477 C = 5031.233779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.324 6.324 3 C 0.166 3.834 4 C -0.290 4.290 5 C -0.037 4.037 6 C -0.232 4.232 7 C 0.271 3.729 8 N -0.720 5.720 9 C 0.266 3.734 10 H 0.042 0.958 11 C -0.153 4.153 12 C -0.530 4.530 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.251 4.251 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.092 0.908 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.127 0.873 27 H 0.390 0.610 28 H 0.090 0.910 29 H 0.014 0.986 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.951 -6.410 1.023 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.238 6.238 3 C 0.120 3.880 4 C -0.311 4.311 5 C -0.056 4.056 6 C -0.255 4.255 7 C 0.160 3.840 8 N -0.341 5.341 9 C 0.163 3.837 10 H 0.060 0.940 11 C -0.212 4.212 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.524 5.524 16 Si 0.729 3.271 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.276 4.276 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.145 0.855 27 H 0.224 0.776 28 H 0.108 0.892 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.650 -6.182 1.034 12.358 hybrid contribution 0.873 -0.151 -0.364 0.958 sum -9.777 -6.333 0.669 11.668 Atomic orbital electron populations 1.22928 0.79207 1.02981 1.01201 1.86005 1.20758 1.27961 1.89058 1.18574 0.91555 0.83411 0.94437 1.20711 0.98783 0.92388 1.19211 1.20573 0.93938 0.96331 0.94794 1.20743 0.93434 0.97836 1.13527 1.17681 0.85133 0.92349 0.88879 1.45629 1.01265 1.10465 1.76719 1.18764 0.92147 0.79334 0.93413 0.94044 1.22185 0.97875 1.03396 0.97695 1.21256 0.99395 0.95461 1.40701 0.92048 1.24873 0.98626 0.95034 0.95164 1.69886 1.37010 0.99410 1.46141 0.86385 0.83557 0.78265 0.78883 1.19734 1.20838 1.20861 1.19606 0.91468 0.96720 1.19776 0.92960 0.92953 0.89002 0.86863 0.86705 0.85492 0.77627 0.89182 0.96665 0.95243 0.92634 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.99 10.49 -19.42 -0.20 -5.19 16 3 C 0.17 2.85 6.68 -39.24 -0.26 2.58 16 4 C -0.29 -4.62 9.04 -39.39 -0.36 -4.97 16 5 C -0.04 -0.62 10.03 -39.63 -0.40 -1.02 16 6 C -0.23 -4.53 8.84 -39.35 -0.35 -4.88 16 7 C 0.27 5.45 6.63 -83.81 -0.56 4.89 16 8 N -0.72 -15.43 5.24 -53.30 -0.28 -15.71 16 9 C 0.27 6.51 2.25 -69.08 -0.16 6.36 16 10 H 0.04 1.11 6.48 -51.93 -0.34 0.77 16 11 C -0.15 -3.65 9.20 37.16 0.34 -3.31 16 12 C -0.53 -14.01 8.73 -34.44 -0.30 -14.32 16 13 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 14 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 16 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.25 -4.66 9.83 -39.24 -0.39 -5.05 16 21 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 22 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 23 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.11 1.49 6.29 -52.49 -0.33 1.16 16 25 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.13 2.61 6.10 -52.49 -0.32 2.29 16 27 H 0.39 7.85 8.55 -40.82 -0.35 7.50 16 28 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 29 H 0.01 0.32 7.70 -51.93 -0.40 -0.08 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 269.23 15.07 4.06 4.06 Total: -1.00 -28.09 269.23 -6.42 -34.51 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.08 Total: 7.15 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.52 Total: -16.73 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.35 Total: -39.41 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.20 Total: -5.19 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.09 -6.42 -34.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032008250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.832 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds