Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 117.00529 * 2 1 4 4 C 1.38817 * 120.01349 * 359.97438 * 3 2 1 5 5 C 1.38171 * 120.09211 * 179.97438 * 4 3 2 6 6 C 1.38161 * 120.12907 * 0.04134 * 5 4 3 7 7 C 1.38927 * 120.03138 * 0.02562 * 6 5 4 8 8 N 1.39675 * 120.04461 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99915 * 359.97438 * 8 7 6 10 10 H 1.09004 * 109.47268 * 35.00149 * 9 8 7 11 11 C 1.53002 * 109.47495 * 275.00481 * 9 8 7 12 12 C 1.50700 * 109.47128 * 155.00009 * 9 8 7 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 9 8 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 9 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 9 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 C 1.38569 * 120.02069 * 180.32079 * 3 2 1 21 21 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47005 * 299.99902 * 1 2 3 23 23 H 1.09003 * 109.47223 * 59.99777 * 1 2 3 24 24 H 1.08000 * 119.95180 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.93710 * 180.02562 * 5 4 3 26 26 H 1.07998 * 119.98387 * 179.97438 * 6 5 4 27 27 H 0.97000 * 119.99993 * 180.02562 * 8 7 6 28 28 H 1.08996 * 109.46989 * 180.02562 * 11 9 8 29 29 H 1.09002 * 109.46768 * 299.99572 * 11 9 8 30 30 H 1.08996 * 109.46948 * 59.99739 * 11 9 8 31 31 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 32 32 H 1.08003 * 120.06966 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2904 2.3753 -0.0005 5 6 1.9161 3.6072 0.0000 6 6 3.2955 3.6844 0.0002 7 6 4.0569 2.5223 -0.0007 8 7 5.4515 2.6000 -0.0010 9 6 6.1122 3.9075 -0.0010 10 1 5.5250 4.6114 0.5887 11 6 6.2297 4.4197 -1.4379 12 6 7.4882 3.7750 0.5991 13 1 7.8359 2.8129 0.9455 14 6 8.3033 4.8820 0.7060 15 7 7.8819 6.0525 0.2793 16 14 10.0092 4.7176 1.4492 17 1 10.2435 3.3050 1.8430 18 1 11.0267 5.1283 0.4487 19 1 10.1132 5.5887 2.6474 20 6 3.4298 1.2837 -0.0067 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.2119 2.3182 -0.0005 25 1 1.3257 4.5115 0.0000 26 1 3.7821 4.6485 0.0002 27 1 5.9825 1.7883 -0.0020 28 1 6.7217 5.3923 -1.4379 29 1 6.8170 3.7159 -2.0276 30 1 5.2344 4.5156 -1.8719 31 1 8.4552 6.8313 0.3548 32 1 4.0193 0.3788 -0.0124 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032008252.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = -33.667776 kcal Electronic energy + Delta-G solvation = -14570.282569 eV Core-core repulsion = 12109.187854 eV Total energy + Delta-G solvation = -2461.094715 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.94032 -39.02593 -36.76385 -34.49318 -32.01791 -30.78821 -28.91762 -27.80065 -27.25117 -23.69928 -23.13602 -21.49680 -19.21938 -18.50427 -17.27928 -16.89510 -16.52610 -16.44851 -16.34407 -15.46057 -14.47172 -14.41363 -14.34699 -14.01959 -13.51883 -13.09200 -12.95182 -12.89625 -12.74084 -12.43977 -12.21847 -12.00775 -11.90168 -11.69523 -11.08193 -10.77796 -10.48596 -9.18837 -8.23167 -8.11114 -6.34185 0.63477 0.82107 1.41499 1.43401 1.54659 2.31602 2.43585 3.03402 3.04869 3.12271 4.04458 4.32953 4.40830 4.46897 4.48764 4.63098 4.70889 4.74525 4.80547 4.98724 5.03539 5.13006 5.40802 5.47119 5.51560 5.61567 5.73995 5.79296 5.92623 6.10353 6.54249 6.61267 6.83645 7.17867 7.38213 8.86653 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058456 B = 0.005867 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.875063 B = 4771.283373 C = 5031.911368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.165 3.835 4 C -0.277 4.277 5 C -0.033 4.033 6 C -0.257 4.257 7 C 0.249 3.751 8 N -0.728 5.728 9 C 0.276 3.724 10 H 0.013 0.987 11 C -0.139 4.139 12 C -0.549 4.549 13 H 0.060 0.940 14 C 0.020 3.980 15 N -0.913 5.913 16 Si 0.967 3.033 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.280 1.280 20 C -0.261 4.261 21 H 0.119 0.881 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.150 0.850 25 H 0.145 0.855 26 H 0.106 0.894 27 H 0.394 0.606 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.266 0.734 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 -7.405 -0.816 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.119 3.881 4 C -0.298 4.298 5 C -0.052 4.052 6 C -0.280 4.280 7 C 0.141 3.859 8 N -0.351 5.351 9 C 0.172 3.828 10 H 0.031 0.969 11 C -0.198 4.198 12 C -0.587 4.587 13 H 0.078 0.922 14 C -0.181 4.181 15 N -0.551 5.551 16 Si 0.792 3.208 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.285 4.285 21 H 0.137 0.863 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.167 0.833 25 H 0.163 0.837 26 H 0.124 0.876 27 H 0.228 0.772 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.191 -7.205 -0.834 14.186 hybrid contribution 1.121 0.083 0.303 1.164 sum -11.070 -7.122 -0.531 13.174 Atomic orbital electron populations 1.23326 0.76429 1.05345 1.02325 1.85999 1.23571 1.26973 1.88596 1.18690 0.91269 0.84694 0.93456 1.21104 1.00562 0.91366 1.16757 1.20904 0.92864 0.98125 0.93259 1.20769 0.94935 0.96799 1.15515 1.17861 0.84466 0.93363 0.90254 1.45311 1.02024 1.09240 1.78546 1.18400 0.91201 0.80314 0.92878 0.96916 1.21999 0.98035 1.02029 0.97699 1.21566 1.00272 0.95523 1.41315 0.92187 1.25668 1.02203 0.94709 0.95489 1.70004 1.38337 1.00011 1.46766 0.85379 0.79131 0.78296 0.78024 1.19265 1.20330 1.20533 1.19713 0.92648 0.96184 1.19996 0.86292 0.91772 0.91719 0.83286 0.83735 0.87592 0.77228 0.91317 0.95333 0.95680 0.92466 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.44 10.49 -92.40 -0.97 -10.41 16 3 C 0.17 5.31 6.68 22.49 0.15 5.46 16 4 C -0.28 -7.95 9.04 22.39 0.20 -7.75 16 5 C -0.03 -1.03 10.03 22.24 0.22 -0.81 16 6 C -0.26 -10.11 8.85 22.42 0.20 -9.91 16 7 C 0.25 10.15 6.63 38.20 0.25 10.40 16 8 N -0.73 -32.10 5.24 -322.56 -1.69 -33.79 16 9 C 0.28 13.99 2.25 44.25 0.10 14.09 16 10 H 0.01 0.73 6.48 -2.38 -0.02 0.71 16 11 C -0.14 -6.83 9.20 71.98 0.66 -6.17 16 12 C -0.55 -29.63 8.73 25.60 0.22 -29.41 16 13 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 14 C 0.02 1.05 5.31 84.66 0.45 1.50 16 15 N -0.91 -51.06 11.31 21.45 0.24 -50.82 16 16 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 C -0.26 -9.56 9.83 22.49 0.22 -9.34 16 21 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.06 0.96 7.66 -2.39 -0.02 0.95 16 23 H 0.06 0.96 7.66 -2.39 -0.02 0.95 16 24 H 0.15 3.18 6.29 -2.91 -0.02 3.17 16 25 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 26 H 0.11 4.56 6.11 -2.91 -0.02 4.54 16 27 H 0.39 16.31 8.55 -92.71 -0.79 15.51 16 28 H 0.07 3.68 6.06 -2.39 -0.01 3.66 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.02 1.13 7.71 -2.39 -0.02 1.11 16 31 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -60.51 269.23 3.73 -56.78 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.33 Total: 24.14 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 3.80 Total: -30.47 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.45 Total: -84.61 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.97 Total: -10.41 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -60.51 3.73 -56.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032008252.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.113 kcal (2) G-P(sol) polarization free energy of solvation -60.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds