Wall clock time and date at job start Mon Mar 30 2020 02:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.47450 * 2 1 4 4 C 1.46898 * 111.00074 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46794 * 179.97438 * 4 3 2 6 6 C 1.38299 * 119.93387 * 269.72448 * 5 4 3 7 7 C 1.38104 * 120.07099 * 179.72925 * 6 5 4 8 8 C 1.38876 * 119.93035 * 0.56939 * 7 6 5 9 9 O 1.35749 * 120.07227 * 179.68373 * 8 7 6 10 10 C 1.34827 * 117.00097 * 174.48572 * 9 8 7 11 11 H 1.07998 * 120.00267 * 5.05424 * 10 9 8 12 12 C 1.38661 * 119.99659 * 185.06077 * 10 9 8 13 13 N 1.31556 * 119.99980 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99554 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47110 * 59.99742 * 14 12 10 16 16 H 1.48501 * 109.46465 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.47191 * 299.99393 * 14 12 10 18 18 C 1.38884 * 119.85904 * 359.70227 * 8 7 6 19 19 C 1.38098 * 119.93184 * 0.02562 * 18 8 7 20 20 H 1.08996 * 109.46972 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46860 * 299.99808 * 1 2 3 22 22 H 1.08998 * 109.47061 * 59.99765 * 1 2 3 23 23 H 1.09003 * 109.46860 * 240.00192 * 2 1 3 24 24 H 1.08998 * 109.47061 * 120.00235 * 2 1 3 25 25 H 1.00905 * 111.00111 * 303.95864 * 3 2 1 26 26 H 1.09002 * 109.46923 * 299.99564 * 4 3 2 27 27 H 1.08993 * 109.47205 * 60.00244 * 4 3 2 28 28 H 1.07999 * 119.96348 * 359.97438 * 6 5 4 29 29 H 1.08002 * 120.03284 * 180.27804 * 7 6 5 30 30 H 0.97000 * 119.99701 * 180.02562 * 13 12 10 31 31 H 1.08000 * 120.03312 * 179.97438 * 18 8 7 32 32 H 1.08002 * 119.96132 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 3.9525 2.8578 -0.0012 6 6 4.1701 3.5122 -1.2000 7 6 4.5901 4.8278 -1.2039 8 6 4.8054 5.4900 -0.0023 9 8 5.2245 6.7812 -0.0028 10 6 5.3042 7.3993 1.1927 11 1 5.1193 6.8447 2.1008 12 6 5.6233 8.7472 1.2564 13 7 5.8488 9.4227 0.1502 14 14 5.7343 9.6035 2.9129 15 1 6.7791 8.9479 3.7399 16 1 6.0884 11.0312 2.7092 17 1 4.4244 9.5119 3.6062 18 6 4.5915 4.8283 1.1999 19 6 4.1660 3.5145 1.1970 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6442 1.9013 -0.7814 26 1 3.8655 0.9200 0.8892 27 1 3.8647 0.9203 -0.8908 28 1 4.0075 2.9951 -2.1341 29 1 4.7555 5.3396 -2.1404 30 1 6.0724 10.3655 0.1948 31 1 4.7584 5.3404 2.1359 32 1 3.9998 2.9993 2.1316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034994865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:28 Heat of formation + Delta-G solvation = -10.926266 kcal Electronic energy + Delta-G solvation = -14182.516103 eV Core-core repulsion = 11722.407533 eV Total energy + Delta-G solvation = -2460.108570 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.05376 -37.17736 -35.65001 -32.36387 -31.24590 -30.13630 -28.34329 -25.52184 -23.90883 -22.08272 -21.89010 -20.37029 -17.95730 -16.92124 -15.95116 -14.96215 -14.78586 -14.51760 -14.44247 -13.75112 -13.56033 -13.12518 -12.96033 -12.65323 -12.23171 -11.98522 -11.70246 -11.50216 -11.22183 -11.15842 -10.74083 -10.66278 -10.48724 -10.42087 -9.31007 -8.81384 -8.33054 -8.14050 -7.16038 -6.43270 -4.02085 2.24663 2.31996 3.14732 3.15957 3.18647 3.98592 4.28864 4.72403 5.00091 5.11908 5.15543 5.29053 5.38444 5.43071 5.49425 5.70844 5.77674 5.86204 5.90950 5.93852 6.08568 6.23854 6.45762 6.72644 6.93658 7.04523 7.15753 7.24263 7.42727 7.46185 7.52707 7.85689 8.01978 9.02410 9.72684 10.74775 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051710 B = 0.005227 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.353321 B = 5355.672386 C = 5621.023338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 N -0.687 5.687 4 C 0.117 3.883 5 C -0.185 4.185 6 C -0.069 4.069 7 C -0.194 4.194 8 C 0.155 3.845 9 O -0.178 6.178 10 C -0.392 4.392 11 H 0.092 0.908 12 C 0.039 3.961 13 N -0.864 5.864 14 Si 0.941 3.059 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.270 1.270 18 C -0.235 4.235 19 C -0.049 4.049 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.024 0.976 24 H 0.068 0.932 25 H 0.341 0.659 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 -13.481 0.405 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.319 5.319 4 C -0.011 4.011 5 C -0.187 4.187 6 C -0.088 4.088 7 C -0.213 4.213 8 C 0.101 3.899 9 O -0.082 6.082 10 C -0.469 4.469 11 H 0.109 0.891 12 C -0.165 4.165 13 N -0.499 5.499 14 Si 0.766 3.234 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.195 1.195 18 C -0.255 4.255 19 C -0.068 4.068 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.159 0.841 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.635 -13.019 0.843 14.212 hybrid contribution 0.246 0.181 -0.049 0.309 sum -5.389 -12.838 0.794 13.946 Atomic orbital electron populations 1.21769 0.95220 1.01311 1.02489 1.21920 0.95528 0.90218 1.00067 1.60604 1.08410 1.12514 1.50394 1.20619 0.86746 0.93895 0.99814 1.19131 1.10390 0.95765 0.93387 1.20479 0.98286 0.93590 0.96438 1.20167 1.09831 0.95110 0.96208 1.19399 0.91211 0.85958 0.93294 1.83973 1.72236 1.18981 1.32965 1.21293 1.49599 0.92844 0.83131 0.89092 1.25288 0.96533 0.95389 0.99274 1.70031 1.43476 1.09320 1.27039 0.85782 0.79133 0.78361 0.80170 1.19505 1.20286 1.19471 1.21171 1.10107 0.95797 0.98382 1.20576 0.95998 0.93665 0.96571 0.92524 0.91803 0.92889 0.95826 0.91324 0.84082 0.91251 0.95516 0.87511 0.86612 0.91986 0.85585 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.17 37.16 0.38 -1.00 16 2 C 0.05 0.55 6.40 -3.82 -0.02 0.53 16 3 N -0.69 -9.07 6.49 -115.06 -0.75 -9.82 16 4 C 0.12 1.65 5.81 -4.98 -0.03 1.62 16 5 C -0.19 -3.23 5.40 -104.58 -0.56 -3.80 16 6 C -0.07 -1.25 9.69 -39.61 -0.38 -1.63 16 7 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 8 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 9 O -0.18 -5.16 9.76 0.06 0.00 -5.16 16 10 C -0.39 -11.11 9.49 30.89 0.29 -10.81 16 11 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 12 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 13 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 14 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 C -0.24 -5.23 9.17 -39.39 -0.36 -5.59 16 19 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 20 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.34 4.44 8.72 -39.29 -0.34 4.10 16 26 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 27 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 32 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -30.19 277.67 -6.92 -37.12 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.27 Total: 4.80 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -1.83 Total: -22.01 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.01 Total: -34.59 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.19 -6.92 -37.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034994865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.189 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds