Wall clock time and date at job start Mon Mar 30 2020 02:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39939 * 120.00032 * 2 1 4 4 C 1.38869 * 120.01551 * 0.27149 * 3 2 1 5 5 C 1.38107 * 119.97712 * 180.28230 * 4 3 2 6 6 C 1.38708 * 120.01978 * 359.44465 * 5 4 3 7 7 O 1.35999 * 119.98081 * 180.30371 * 6 5 4 8 8 C 1.42895 * 116.99908 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47207 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47103 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00075 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99792 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00239 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99893 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47002 * 90.00583 * 14 12 10 16 16 H 1.48504 * 109.47545 * 209.99959 * 14 12 10 17 17 H 1.48496 * 109.47307 * 330.00363 * 14 12 10 18 18 C 1.38703 * 120.03548 * 0.27995 * 6 5 4 19 19 C 1.38112 * 120.02059 * 359.97438 * 18 6 5 20 20 H 1.09002 * 109.47181 * 299.99649 * 1 2 3 21 21 H 1.08996 * 109.47409 * 60.00521 * 1 2 3 22 22 H 1.09007 * 109.47164 * 180.02562 * 1 2 3 23 23 H 0.97000 * 119.99932 * 179.97438 * 2 1 3 24 24 H 1.07998 * 120.00986 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.99286 * 179.72912 * 5 4 3 26 26 H 1.09003 * 109.47134 * 299.99744 * 8 7 6 27 27 H 1.08996 * 109.47717 * 59.99736 * 8 7 6 28 28 H 1.08997 * 109.46737 * 299.99584 * 9 8 7 29 29 H 1.08996 * 109.47350 * 59.99643 * 9 8 7 30 30 H 0.96999 * 120.00211 * 180.02562 * 13 12 10 31 31 H 1.07997 * 119.98646 * 180.02562 * 18 6 5 32 32 H 1.08000 * 120.00547 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1647 1.2119 0.0000 4 6 1.4707 2.4147 0.0057 5 6 2.1620 3.6103 -0.0002 6 6 3.5491 3.6099 -0.0002 7 8 4.2291 4.7877 0.0003 8 6 5.6561 4.7129 -0.0003 9 6 6.2409 6.1268 -0.0003 10 6 7.7458 6.0479 -0.0003 11 1 8.2361 5.0857 0.0002 12 6 8.4967 7.2043 -0.0009 13 7 7.8997 8.3761 -0.0009 14 14 10.3621 7.1066 -0.0001 15 1 10.8570 7.0798 -1.4000 16 1 10.9197 8.2920 0.6993 17 1 10.7928 5.8703 0.7009 18 6 4.2430 2.4089 -0.0001 19 6 3.5533 1.2124 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.9500 -0.8400 0.0004 24 1 0.3908 2.4152 0.0105 25 1 1.6225 4.5459 -0.0002 26 1 5.9923 4.1803 0.8893 27 1 5.9918 4.1813 -0.8906 28 1 5.9046 6.6590 -0.8902 29 1 5.9052 6.6589 0.8898 30 1 8.4279 9.1896 -0.0017 31 1 5.3230 2.4095 0.0004 32 1 4.0938 0.2774 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038057106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:29 Heat of formation + Delta-G solvation = -21.187836 kcal Electronic energy + Delta-G solvation = -14055.022559 eV Core-core repulsion = 11594.469014 eV Total energy + Delta-G solvation = -2460.553545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.67075 -37.64605 -34.72361 -33.24018 -30.96728 -30.11741 -28.55117 -25.82548 -24.62583 -22.67766 -21.47048 -20.24930 -17.87079 -17.09022 -16.14713 -15.75878 -15.16319 -14.60693 -14.48037 -14.27236 -14.03293 -13.23686 -12.86590 -12.59572 -12.36478 -12.20676 -11.91845 -11.54191 -11.18577 -10.89930 -10.66047 -10.34241 -9.99641 -9.59358 -9.24522 -9.16174 -8.76342 -8.40420 -6.89024 -6.06470 -4.10758 1.58245 1.93223 3.29877 3.35702 3.38774 3.49666 4.04514 4.12105 4.46005 4.96337 5.10517 5.14160 5.29828 5.31540 5.51533 5.57224 5.61238 5.88597 6.09563 6.13689 6.24214 6.29559 6.49343 6.67181 6.81062 6.94349 7.37343 7.57626 7.70988 7.72740 7.88735 8.20803 8.30588 8.95110 9.53250 11.05193 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.078252 B = 0.004512 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.732456 B = 6204.144751 C = 6536.127813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.762 5.762 3 C 0.160 3.840 4 C -0.156 4.156 5 C -0.116 4.116 6 C 0.093 3.907 7 O -0.320 6.320 8 C 0.067 3.933 9 C 0.025 3.975 10 C -0.525 4.525 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.890 5.890 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.165 4.165 19 C -0.153 4.153 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.396 0.604 24 H 0.122 0.878 25 H 0.128 0.872 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.263 0.737 31 H 0.130 0.870 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 -15.243 0.007 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.395 5.395 3 C 0.060 3.940 4 C -0.179 4.179 5 C -0.136 4.136 6 C 0.046 3.954 7 O -0.234 6.234 8 C -0.007 4.007 9 C -0.012 4.012 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.184 4.184 19 C -0.175 4.175 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.229 0.771 24 H 0.140 0.860 25 H 0.145 0.855 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.636 -14.778 0.013 19.444 hybrid contribution 1.372 -0.497 -0.011 1.459 sum -11.265 -15.275 0.002 18.979 Atomic orbital electron populations 1.21422 0.80824 1.01707 1.00767 1.44264 1.05101 1.05056 1.85123 1.17662 0.90975 0.86195 0.99152 1.20365 0.99074 0.90420 1.07997 1.20223 0.91279 0.98165 1.03901 1.19001 0.91845 0.85675 0.98877 1.86159 1.22259 1.26893 1.88098 1.23233 0.75149 1.03005 0.99348 1.19113 0.94790 0.88520 0.98793 1.20996 0.90555 0.92804 1.52016 0.92395 1.24992 0.98970 0.95285 0.94986 1.69979 1.35636 0.97358 1.49864 0.86494 0.85054 0.77673 0.78188 1.20523 1.21081 1.19775 1.21140 1.00408 0.91682 1.05218 1.20338 0.91841 0.97814 1.07537 0.93392 0.93380 0.91409 0.77066 0.86040 0.85453 0.93431 0.93439 0.95455 0.95449 0.92752 0.85249 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 9.94 59.85 0.60 1.33 16 2 N -0.76 -7.61 5.90 -65.34 -0.39 -7.99 16 3 C 0.16 2.11 6.66 -83.70 -0.56 1.56 16 4 C -0.16 -2.13 9.31 -39.40 -0.37 -2.50 16 5 C -0.12 -1.85 9.98 -39.46 -0.39 -2.24 16 6 C 0.09 1.71 6.69 -39.24 -0.26 1.45 16 7 O -0.32 -6.90 10.14 -19.74 -0.20 -7.10 16 8 C 0.07 1.49 4.68 37.16 0.17 1.66 16 9 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 10 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 14 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.17 -2.72 9.03 -39.46 -0.36 -3.08 16 19 C -0.15 -2.14 9.89 -39.40 -0.39 -2.53 16 20 H 0.05 0.36 7.94 -51.93 -0.41 -0.05 16 21 H 0.05 0.36 7.96 -51.93 -0.41 -0.05 16 22 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.40 3.22 8.84 -40.82 -0.36 2.86 16 24 H 0.12 1.36 6.73 -52.49 -0.35 1.01 16 25 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 26 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 27 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.13 2.09 6.29 -52.49 -0.33 1.76 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 275.94 15.07 4.16 4.16 Total: -1.00 -31.30 275.94 -7.15 -38.44 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.32 Total: -0.47 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -2.12 Total: -17.43 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.35 Total: -34.09 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.20 Total: -7.10 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.30 -7.15 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038057106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.256 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds