Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39939 * 120.00032 * 2 1 4 4 C 1.38869 * 120.01551 * 0.27149 * 3 2 1 5 5 C 1.38107 * 119.97712 * 180.28230 * 4 3 2 6 6 C 1.38708 * 120.01978 * 359.44465 * 5 4 3 7 7 O 1.35999 * 119.98081 * 180.30371 * 6 5 4 8 8 C 1.42895 * 116.99908 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47207 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47103 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00075 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99792 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00239 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99893 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47002 * 90.00583 * 14 12 10 16 16 H 1.48504 * 109.47545 * 209.99959 * 14 12 10 17 17 H 1.48496 * 109.47307 * 330.00363 * 14 12 10 18 18 C 1.38703 * 120.03548 * 0.27995 * 6 5 4 19 19 C 1.38112 * 120.02059 * 359.97438 * 18 6 5 20 20 H 1.09002 * 109.47181 * 299.99649 * 1 2 3 21 21 H 1.08996 * 109.47409 * 60.00521 * 1 2 3 22 22 H 1.09007 * 109.47164 * 180.02562 * 1 2 3 23 23 H 0.97000 * 119.99932 * 179.97438 * 2 1 3 24 24 H 1.07998 * 120.00986 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.99286 * 179.72912 * 5 4 3 26 26 H 1.09003 * 109.47134 * 299.99744 * 8 7 6 27 27 H 1.08996 * 109.47717 * 59.99736 * 8 7 6 28 28 H 1.08997 * 109.46737 * 299.99584 * 9 8 7 29 29 H 1.08996 * 109.47350 * 59.99643 * 9 8 7 30 30 H 0.96999 * 120.00211 * 180.02562 * 13 12 10 31 31 H 1.07997 * 119.98646 * 180.02562 * 18 6 5 32 32 H 1.08000 * 120.00547 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1647 1.2119 0.0000 4 6 1.4707 2.4147 0.0057 5 6 2.1620 3.6103 -0.0002 6 6 3.5491 3.6099 -0.0002 7 8 4.2291 4.7877 0.0003 8 6 5.6561 4.7129 -0.0003 9 6 6.2409 6.1268 -0.0003 10 6 7.7458 6.0479 -0.0003 11 1 8.2361 5.0857 0.0002 12 6 8.4967 7.2043 -0.0009 13 7 7.8997 8.3761 -0.0009 14 14 10.3621 7.1066 -0.0001 15 1 10.8570 7.0798 -1.4000 16 1 10.9197 8.2920 0.6993 17 1 10.7928 5.8703 0.7009 18 6 4.2430 2.4089 -0.0001 19 6 3.5533 1.2124 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.9500 -0.8400 0.0004 24 1 0.3908 2.4152 0.0105 25 1 1.6225 4.5459 -0.0002 26 1 5.9923 4.1803 0.8893 27 1 5.9918 4.1813 -0.8906 28 1 5.9046 6.6590 -0.8902 29 1 5.9052 6.6589 0.8898 30 1 8.4279 9.1896 -0.0017 31 1 5.3230 2.4095 0.0004 32 1 4.0938 0.2774 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038057106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -41.406589 kcal Electronic energy + Delta-G solvation = -14055.899310 eV Core-core repulsion = 11594.469014 eV Total energy + Delta-G solvation = -2461.430296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95004 -38.95183 -35.90548 -35.22444 -32.44095 -31.76878 -29.67257 -27.24966 -26.09012 -24.04088 -22.97122 -21.72295 -19.32984 -18.38151 -17.88946 -17.03451 -16.83178 -16.48472 -15.63388 -15.22979 -15.05335 -14.43941 -14.34820 -14.14046 -14.08922 -13.40519 -13.05886 -12.98139 -12.74760 -12.65588 -12.46218 -11.79397 -11.70264 -11.53895 -11.33524 -10.62172 -10.33928 -9.92199 -8.25426 -7.98439 -6.39224 0.42832 0.72799 1.41517 1.44132 1.55331 2.33173 2.59547 2.73210 2.94225 3.08744 3.94773 4.03814 4.26956 4.31612 4.44044 4.46468 4.53465 4.74857 4.76625 4.79039 4.98614 5.11184 5.12821 5.35307 5.38647 5.49693 5.57290 5.69339 5.79033 6.08982 6.41764 6.71353 6.76450 6.95490 7.30854 8.87879 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.078252 B = 0.004512 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.732456 B = 6204.144751 C = 6536.127813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.753 5.753 3 C 0.171 3.829 4 C -0.158 4.158 5 C -0.121 4.121 6 C 0.046 3.954 7 O -0.346 6.346 8 C 0.086 3.914 9 C 0.028 3.972 10 C -0.547 4.547 11 H 0.070 0.930 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.977 3.023 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.259 1.259 18 C -0.171 4.171 19 C -0.158 4.158 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.095 0.905 23 H 0.407 0.593 24 H 0.149 0.851 25 H 0.130 0.870 26 H 0.056 0.944 27 H 0.056 0.944 28 H -0.003 1.003 29 H -0.003 1.003 30 H 0.267 0.733 31 H 0.127 0.873 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 -17.892 0.006 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.386 5.386 3 C 0.069 3.931 4 C -0.180 4.180 5 C -0.140 4.140 6 C 0.000 4.000 7 O -0.261 6.261 8 C 0.012 3.988 9 C -0.009 4.009 10 C -0.585 4.585 11 H 0.088 0.912 12 C -0.198 4.198 13 N -0.571 5.571 14 Si 0.801 3.199 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.183 1.183 18 C -0.191 4.191 19 C -0.180 4.180 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.114 0.886 23 H 0.242 0.758 24 H 0.166 0.834 25 H 0.148 0.852 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.144 0.856 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.867 -17.487 0.011 21.710 hybrid contribution 1.227 0.198 -0.011 1.243 sum -11.640 -17.288 0.000 20.842 Atomic orbital electron populations 1.21655 0.79063 1.03771 1.00954 1.44424 1.06305 1.04345 1.83516 1.17837 0.91009 0.87365 0.96935 1.20619 1.00354 0.89697 1.07341 1.20417 0.90496 0.99469 1.03643 1.19322 0.92732 0.85160 1.02789 1.86064 1.21404 1.29258 1.89400 1.22765 0.76243 0.99731 1.00081 1.18960 0.95114 0.90931 0.95889 1.21418 0.91316 0.93610 1.52113 0.91154 1.26062 1.04885 0.94688 0.94137 1.70125 1.37999 0.98306 1.50666 0.85265 0.77800 0.78188 0.78676 1.19504 1.20616 1.18304 1.21213 1.00443 0.92032 1.05378 1.20591 0.92481 0.97877 1.07050 0.93146 0.93142 0.88590 0.75765 0.83385 0.85173 0.92608 0.92599 0.98418 0.98413 0.92437 0.85562 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 9.94 127.77 1.27 2.28 16 2 N -0.75 -12.25 5.90 -360.65 -2.13 -14.37 16 3 C 0.17 4.06 6.66 38.15 0.25 4.31 16 4 C -0.16 -3.98 9.31 22.39 0.21 -3.78 16 5 C -0.12 -3.83 9.98 22.35 0.22 -3.61 16 6 C 0.05 1.72 6.69 22.49 0.15 1.87 16 7 O -0.35 -15.60 10.14 -93.54 -0.95 -16.55 16 8 C 0.09 3.98 4.68 71.98 0.34 4.32 16 9 C 0.03 1.60 5.34 29.85 0.16 1.76 16 10 C -0.55 -31.63 9.11 25.60 0.23 -31.40 16 11 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 14 Si 0.98 44.11 29.54 68.60 2.03 46.14 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 18 C -0.17 -5.59 9.03 22.35 0.20 -5.39 16 19 C -0.16 -4.09 9.89 22.39 0.22 -3.87 16 20 H 0.05 0.58 7.94 -2.39 -0.02 0.56 16 21 H 0.05 0.58 7.96 -2.39 -0.02 0.56 16 22 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 23 H 0.41 5.00 8.84 -92.71 -0.82 4.18 16 24 H 0.15 2.88 6.73 -2.91 -0.02 2.86 16 25 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 26 H 0.06 2.43 7.66 -2.39 -0.02 2.41 16 27 H 0.06 2.43 7.66 -2.39 -0.02 2.41 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.13 4.07 6.29 -2.91 -0.02 4.06 16 32 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -69.06 275.94 3.25 -65.81 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.29 Total: 9.33 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 3.72 Total: -33.00 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.84 Total: -71.74 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.95 Total: -16.55 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.06 3.25 -65.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038057106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.408 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds