Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39929 * 120.00129 * 2 1 4 4 C 1.38859 * 120.02134 * 179.97438 * 3 2 1 5 5 C 1.38110 * 119.98739 * 179.97438 * 4 3 2 6 6 C 1.38700 * 120.01378 * 0.02562 * 5 4 3 7 7 O 1.36009 * 119.98131 * 179.97438 * 6 5 4 8 8 C 1.42899 * 116.99873 * 354.52630 * 7 6 5 9 9 H 1.09003 * 109.46987 * 324.91933 * 8 7 6 10 10 C 1.52995 * 109.47092 * 84.91410 * 8 7 6 11 11 C 1.50701 * 109.47190 * 204.91800 * 8 7 6 12 12 H 1.07998 * 119.99631 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99843 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99890 * 179.97438 * 13 11 8 15 15 Si 1.86795 * 120.00082 * 0.02562 * 13 11 8 16 16 H 1.48504 * 109.47196 * 89.99783 * 15 13 11 17 17 H 1.48504 * 109.47300 * 209.99607 * 15 13 11 18 18 H 1.48500 * 109.47416 * 330.00039 * 15 13 11 19 19 C 1.38700 * 120.04149 * 0.22572 * 6 5 4 20 20 C 1.38118 * 120.01613 * 359.49812 * 19 6 5 21 21 H 1.09002 * 109.47387 * 60.00422 * 1 2 3 22 22 H 1.09004 * 109.47163 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47381 * 300.00227 * 1 2 3 24 24 H 0.97002 * 119.99677 * 179.97438 * 2 1 3 25 25 H 1.08008 * 120.00675 * 359.95917 * 4 3 2 26 26 H 1.07995 * 119.99640 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47271 * 60.00287 * 10 8 7 28 28 H 1.09002 * 109.47248 * 179.97438 * 10 8 7 29 29 H 1.09003 * 109.47586 * 300.00545 * 10 8 7 30 30 H 0.97003 * 119.99930 * 179.97438 * 14 13 11 31 31 H 1.07999 * 119.99478 * 179.72438 * 19 6 5 32 32 H 1.07997 * 120.00899 * 180.25039 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1646 1.2118 0.0000 4 6 3.5532 1.2123 0.0005 5 6 4.2431 2.4088 0.0000 6 6 3.5492 3.6097 -0.0005 7 8 4.2292 4.7876 -0.0005 8 6 5.6512 4.7157 0.1215 9 1 5.9182 3.8867 0.7770 10 6 6.2710 4.4936 -1.2596 11 6 6.1712 6.0045 0.7042 12 1 5.4845 6.7992 0.9557 13 6 7.5236 6.1691 0.9161 14 7 7.9774 7.2941 1.4242 15 14 8.7113 4.7949 0.4803 16 1 9.1639 4.9586 -0.9246 17 1 9.8854 4.8489 1.3880 18 1 8.0291 3.4845 0.6310 19 6 2.1622 3.6103 0.0042 20 6 1.4708 2.4146 -0.0010 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.9499 -0.8401 0.0004 25 1 4.0937 0.2772 0.0016 26 1 5.3230 2.4093 0.0000 27 1 6.0041 5.3225 -1.9152 28 1 7.3557 4.4392 -1.1666 29 1 5.8948 3.5614 -1.6811 30 1 8.9289 7.4097 1.5736 31 1 1.6227 4.5458 0.0083 32 1 0.3908 2.4152 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038057254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = -25.721212 kcal Electronic energy + Delta-G solvation = -14674.651449 eV Core-core repulsion = 12213.901322 eV Total energy + Delta-G solvation = -2460.750127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.98303 -38.98740 -35.91823 -34.99347 -32.74464 -31.66351 -29.69177 -27.29039 -26.46059 -23.94712 -23.31269 -21.57554 -19.29241 -18.64216 -17.91469 -17.41916 -16.41037 -16.01395 -15.61021 -15.15123 -14.95856 -14.76477 -14.44597 -14.31465 -13.87824 -13.50341 -13.27662 -13.11254 -12.83572 -12.69706 -12.30869 -11.96231 -11.71465 -11.51757 -11.11921 -10.85930 -10.24881 -9.88261 -8.41090 -7.92204 -6.49725 0.45910 0.78381 1.26664 1.31941 1.42900 2.22962 2.64947 2.79104 2.91481 2.99898 3.99791 4.05872 4.23876 4.42297 4.47431 4.49017 4.51220 4.60770 4.75888 4.76379 4.84021 5.00122 5.14675 5.18664 5.34860 5.39282 5.43596 5.64642 5.81743 6.04723 6.47834 6.54261 6.92951 6.99529 7.16837 8.76114 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056135 B = 0.006538 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.674450 B = 4281.884296 C = 4573.655276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.754 5.754 3 C 0.169 3.831 4 C -0.156 4.156 5 C -0.177 4.177 6 C 0.053 3.947 7 O -0.334 6.334 8 C 0.192 3.808 9 H 0.032 0.968 10 C -0.172 4.172 11 C -0.540 4.540 12 H 0.033 0.967 13 C 0.023 3.977 14 N -0.938 5.938 15 Si 0.951 3.049 16 H -0.255 1.255 17 H -0.286 1.286 18 H -0.244 1.244 19 C -0.126 4.126 20 C -0.155 4.155 21 H 0.050 0.950 22 H 0.096 0.904 23 H 0.048 0.952 24 H 0.407 0.593 25 H 0.143 0.857 26 H 0.122 0.878 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.274 0.726 31 H 0.128 0.872 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.473 -18.057 -4.493 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.386 5.386 3 C 0.066 3.934 4 C -0.179 4.179 5 C -0.196 4.196 6 C 0.006 3.994 7 O -0.249 6.249 8 C 0.136 3.864 9 H 0.050 0.950 10 C -0.229 4.229 11 C -0.578 4.578 12 H 0.051 0.949 13 C -0.176 4.176 14 N -0.577 5.577 15 Si 0.775 3.225 16 H -0.180 1.180 17 H -0.213 1.213 18 H -0.167 1.167 19 C -0.145 4.145 20 C -0.177 4.177 21 H 0.069 0.931 22 H 0.114 0.886 23 H 0.067 0.933 24 H 0.242 0.758 25 H 0.161 0.839 26 H 0.140 0.860 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.618 -17.713 -4.452 21.645 hybrid contribution 1.117 -0.035 0.085 1.121 sum -10.501 -17.748 -4.367 21.079 Atomic orbital electron populations 1.21640 0.79099 1.03713 1.00898 1.44386 1.06246 1.04269 1.83744 1.17780 0.90896 0.87356 0.97328 1.20578 0.92546 0.97704 1.07032 1.21232 1.00283 0.92239 1.05886 1.19393 0.92817 0.85520 1.01621 1.86090 1.22018 1.28660 1.88107 1.20238 0.75857 0.96499 0.93794 0.95039 1.22559 0.99982 1.01685 0.98672 1.21038 0.93287 1.00497 1.42952 0.94878 1.25723 0.99416 0.98552 0.93917 1.70000 1.15466 1.27204 1.45042 0.85832 0.77996 0.80038 0.78640 1.18024 1.21263 1.16739 1.20400 0.90503 0.99404 1.04203 1.20595 1.00254 0.89664 1.07221 0.93129 0.88582 0.93303 0.75810 0.83886 0.85984 0.92441 0.92768 0.91424 0.91687 0.85426 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 9.94 127.77 1.27 2.40 16 2 N -0.75 -13.40 5.90 -360.68 -2.13 -15.53 16 3 C 0.17 4.34 6.66 38.15 0.25 4.60 16 4 C -0.16 -4.44 9.89 22.39 0.22 -4.22 16 5 C -0.18 -6.39 8.24 22.35 0.18 -6.21 16 6 C 0.05 2.17 6.60 22.49 0.15 2.32 16 7 O -0.33 -16.64 9.79 -93.65 -0.92 -17.56 16 8 C 0.19 9.75 1.81 29.85 0.05 9.80 16 9 H 0.03 1.58 5.37 -2.39 -0.01 1.57 16 10 C -0.17 -7.57 8.65 71.98 0.62 -6.95 16 11 C -0.54 -32.93 9.47 25.60 0.24 -32.69 16 12 H 0.03 2.28 8.06 -2.91 -0.02 2.25 16 13 C 0.02 1.33 5.45 84.65 0.46 1.79 16 14 N -0.94 -59.07 13.96 21.45 0.30 -58.77 16 15 Si 0.95 43.77 24.37 68.60 1.67 45.45 16 16 H -0.25 -10.93 6.87 99.48 0.68 -10.25 16 17 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.24 -10.26 6.53 99.48 0.65 -9.61 16 19 C -0.13 -4.35 9.98 22.35 0.22 -4.13 16 20 C -0.15 -4.26 9.31 22.39 0.21 -4.05 16 21 H 0.05 0.64 7.95 -2.39 -0.02 0.62 16 22 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 23 H 0.05 0.63 7.95 -2.39 -0.02 0.61 16 24 H 0.41 5.58 8.84 -92.71 -0.82 4.76 16 25 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 26 H 0.12 4.49 5.41 -2.91 -0.02 4.48 16 27 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.05 2.33 3.27 -2.39 -0.01 2.32 16 29 H 0.07 2.55 6.90 -2.39 -0.02 2.53 16 30 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.15 3.15 6.73 -2.91 -0.02 3.13 16 Total: -1.00 -70.89 261.71 3.05 -67.84 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.23 Total: 15.89 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 3.89 Total: -37.33 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.83 Total: -74.30 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.92 Total: -17.56 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.67 Total: 45.45 kcal Total: -70.89 3.05 -67.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038057254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.124 kcal (2) G-P(sol) polarization free energy of solvation -70.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds