Wall clock time and date at job start Mon Mar 30 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 N 1.46497 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.34949 * 126.03977 * 124.71734 * 10 9 7 12 12 C 1.35319 * 107.74546 * 179.83761 * 11 10 9 13 13 C 1.50695 * 126.03695 * 180.16095 * 12 11 10 14 14 N 1.46906 * 109.46940 * 270.28290 * 13 12 11 15 15 C 1.46901 * 110.99607 * 180.02562 * 14 13 12 16 16 C 1.53003 * 117.49575 * 223.74164 * 15 14 13 17 17 C 1.52997 * 117.49497 * 155.08604 * 15 14 13 18 18 C 1.39869 * 107.91810 * 0.42111 * 12 11 10 19 19 N 1.30840 * 108.20565 * 359.73920 * 18 12 11 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 22 22 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 23 23 H 1.08005 * 126.12216 * 359.97438 * 11 10 9 24 24 H 1.09001 * 109.47637 * 30.28132 * 13 12 11 25 25 H 1.09001 * 109.46896 * 150.28165 * 13 12 11 26 26 H 1.00896 * 111.00037 * 56.04765 * 14 13 12 27 27 H 1.08997 * 115.55415 * 9.41795 * 15 14 13 28 28 H 1.09000 * 117.49844 * 0.02562 * 16 15 14 29 29 H 1.09005 * 117.49284 * 145.02517 * 16 15 14 30 30 H 1.09004 * 117.50184 * 214.97680 * 17 15 14 31 31 H 1.08998 * 117.50403 * 359.97438 * 17 15 14 32 32 H 1.08002 * 125.89397 * 179.75908 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2030 -3.6127 -0.0119 11 6 2.2499 -4.6220 0.8826 12 6 3.2651 -5.4426 0.5257 13 6 3.6800 -6.7024 1.2409 14 7 4.6804 -6.3766 2.2662 15 6 5.1096 -7.5837 2.9851 16 6 5.2358 -7.4919 4.5072 17 6 6.4934 -7.5627 3.6374 18 6 3.8649 -4.9115 -0.6208 19 7 3.2291 -3.8146 -0.9440 20 1 -0.4849 0.8401 0.0041 21 1 0.6280 -2.5591 0.8866 22 1 0.6206 -2.5548 -0.8933 23 1 1.5933 -4.7527 1.7302 24 1 2.8088 -7.1553 1.7143 25 1 4.1090 -7.4026 0.5241 26 1 4.3289 -5.6801 2.9059 27 1 4.7657 -8.5286 2.5646 28 1 4.9999 -6.5361 4.9750 29 1 4.9752 -8.3768 5.0880 30 1 7.0597 -8.4940 3.6465 31 1 7.0855 -6.6536 3.5328 32 1 4.7072 -5.3341 -1.1483 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040932504.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:03 Heat of formation + Delta-G solvation = 97.205194 kcal Electronic energy + Delta-G solvation = -14138.284243 eV Core-core repulsion = 11715.157357 eV Total energy + Delta-G solvation = -2423.126887 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.36032 -37.79239 -34.12746 -33.24110 -31.36689 -29.31464 -27.26558 -24.30054 -22.96545 -22.42561 -21.19657 -20.04219 -19.47816 -16.57944 -16.21066 -15.98645 -15.09446 -14.48896 -14.27455 -13.90094 -13.29860 -13.13993 -12.75974 -12.26921 -12.14668 -11.75348 -11.58795 -11.37915 -10.94260 -10.90264 -10.82817 -10.41918 -10.24859 -9.84832 -9.56396 -8.68541 -8.49480 -8.14400 -7.61240 -6.25590 -4.30270 2.76220 3.22575 3.30172 3.37030 3.39505 3.65545 3.80240 4.31777 4.34494 4.85559 4.91790 5.08910 5.10736 5.40382 5.48179 5.54349 5.56355 5.62146 5.78593 5.89723 6.09389 6.13705 6.32719 6.66608 6.91470 7.04858 7.17344 7.43411 7.48095 7.70208 7.87030 8.03073 8.63589 8.80453 9.35726 10.83568 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038575 B = 0.005304 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.687622 B = 5278.088490 C = 5539.247081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.255 3.745 10 N -0.326 5.326 11 C 0.053 3.947 12 C -0.268 4.268 13 C 0.150 3.850 14 N -0.656 5.656 15 C 0.026 3.974 16 C -0.211 4.211 17 C -0.175 4.175 18 C 0.035 3.965 19 N -0.285 5.285 20 H 0.267 0.733 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.160 0.840 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.344 0.656 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 -13.534 6.287 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.137 3.863 10 N -0.105 5.105 11 C -0.098 4.098 12 C -0.281 4.281 13 C 0.021 3.979 14 N -0.286 5.286 15 C -0.085 4.085 16 C -0.250 4.250 17 C -0.213 4.213 18 C -0.150 4.150 19 N -0.108 5.108 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.177 0.823 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.164 0.836 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.465 -12.283 4.972 14.744 hybrid contribution -0.353 0.123 1.265 1.319 sum 6.112 -12.159 6.237 14.970 Atomic orbital electron populations 1.69932 1.06076 1.27535 1.49896 1.24952 0.94985 0.99605 0.94556 0.86266 0.80136 0.82375 0.77720 1.19473 1.20646 1.20769 1.21296 0.94061 0.89321 1.51900 0.91205 1.19724 0.85879 0.81551 0.99122 1.49425 1.23866 1.19094 1.18124 1.22264 1.00268 0.90743 0.96558 1.19655 1.03126 1.02687 1.02651 1.20018 0.91798 0.93643 0.92412 1.60320 1.42868 1.09023 1.16410 1.22435 1.00037 0.94628 0.91431 1.23429 1.04088 1.03058 0.94463 1.23108 0.91305 1.03133 1.03789 1.23536 1.00242 0.94173 0.97031 1.77407 1.01303 1.17465 1.14596 0.92384 0.92930 0.93711 0.82302 0.95216 0.90823 0.83632 0.87564 0.88783 0.89097 0.89069 0.88484 0.81416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.81 9.24 -34.44 -0.32 -15.13 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.25 6.51 6.26 -5.20 -0.03 6.47 16 10 N -0.33 -7.47 3.67 -62.55 -0.23 -7.70 16 11 C 0.05 1.00 11.36 -17.22 -0.20 0.80 16 12 C -0.27 -4.58 5.61 -105.05 -0.59 -5.17 16 13 C 0.15 2.00 6.02 -4.97 -0.03 1.97 16 14 N -0.66 -8.53 6.77 -107.99 -0.73 -9.26 16 15 C 0.03 0.28 6.31 -67.71 -0.43 -0.15 16 16 C -0.21 -2.00 10.23 -26.69 -0.27 -2.28 16 17 C -0.17 -1.74 10.46 -26.70 -0.28 -2.02 16 18 C 0.04 0.67 11.96 -17.36 -0.21 0.46 16 19 N -0.28 -6.58 12.41 30.63 0.38 -6.20 16 20 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 21 H 0.05 1.32 8.07 -51.93 -0.42 0.90 16 22 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.16 2.49 8.06 -52.48 -0.42 2.06 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.34 4.56 8.51 -39.29 -0.33 4.23 16 27 H 0.11 1.02 7.90 -51.93 -0.41 0.61 16 28 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -29.87 283.56 -7.55 -37.42 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.51 Total: 3.13 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -2.45 Total: -13.42 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.16 Total: -47.91 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.87 -7.55 -37.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040932504.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.625 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds