Wall clock time and date at job start Mon Mar 30 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08704 * 180.02562 * 8 7 6 10 10 C 1.46903 * 110.99734 * 296.04637 * 9 8 7 11 11 C 1.46899 * 110.99880 * 59.99943 * 9 8 7 12 12 C 1.50700 * 109.46881 * 170.00070 * 11 9 8 13 13 H 1.08001 * 120.00294 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00139 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99845 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00198 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47165 * 90.00267 * 16 14 12 18 18 H 1.48501 * 109.47267 * 209.99797 * 16 14 12 19 19 H 1.48500 * 109.47180 * 330.00417 * 16 14 12 20 20 H 1.09001 * 109.46808 * 299.99239 * 1 2 3 21 21 H 1.08992 * 109.47286 * 59.99128 * 1 2 3 22 22 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.98749 * 0.24626 * 4 3 2 24 24 H 1.07997 * 119.90788 * 179.97438 * 5 4 3 25 25 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 26 26 H 1.07999 * 120.00479 * 180.02562 * 7 6 5 27 27 H 1.08997 * 109.47261 * 60.00291 * 10 9 8 28 28 H 1.09000 * 109.46640 * 180.02562 * 10 9 8 29 29 H 1.09000 * 109.46895 * 299.99579 * 10 9 8 30 30 H 1.08999 * 109.47170 * 289.99800 * 11 9 8 31 31 H 1.08999 * 109.47395 * 50.00244 * 11 9 8 32 32 H 0.96996 * 119.99938 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 0.0005 5 6 1.9229 3.6060 0.0011 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0000 8 6 3.4376 1.2868 0.0005 9 7 4.2034 0.1152 0.0005 10 6 4.9951 0.0038 -1.2319 11 6 5.0659 0.0500 1.1879 12 6 5.6867 -1.3198 1.2832 13 1 5.4627 -2.0674 0.5367 14 6 6.5408 -1.6188 2.3235 15 7 6.8140 -0.7083 3.2323 16 14 7.3097 -3.3170 2.4421 17 1 8.6003 -3.3284 1.7074 18 1 7.5493 -3.6535 3.8685 19 1 6.3911 -4.3192 1.8445 20 1 -0.3633 0.5137 0.8901 21 1 -0.3633 0.5139 -0.8898 22 1 -0.3633 -1.0277 0.0005 23 1 0.2152 2.3193 0.0050 24 1 1.3342 4.5114 0.0011 25 1 3.7903 4.6452 0.0005 26 1 5.1401 2.5874 0.0000 27 1 5.6655 0.8595 -1.3118 28 1 5.5802 -0.9155 -1.2060 29 1 4.3265 -0.0157 -2.0926 30 1 5.8523 0.8005 1.1074 31 1 4.4704 0.2420 2.0805 32 1 7.4146 -0.9188 3.9644 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049800106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:10 Heat of formation + Delta-G solvation = -21.803899 kcal Electronic energy + Delta-G solvation = -14944.010589 eV Core-core repulsion = 12483.430329 eV Total energy + Delta-G solvation = -2460.580259 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.21458 -38.84333 -37.23575 -34.69362 -31.12055 -30.91418 -29.16048 -27.96803 -26.63407 -24.30783 -22.90553 -21.73907 -19.07833 -18.44252 -17.19338 -17.03076 -16.72408 -16.41724 -15.52518 -15.37909 -15.10674 -15.09245 -14.16172 -13.99912 -13.47787 -13.21503 -12.94476 -12.81685 -12.64191 -12.56856 -12.39644 -12.08512 -11.89502 -11.79072 -11.33396 -10.64599 -9.75148 -9.14431 -8.98082 -8.21952 -6.33248 0.35468 0.54644 1.39820 1.42226 1.54250 2.39452 2.54459 2.82907 3.09558 3.24900 3.97812 4.11044 4.26329 4.37643 4.46175 4.48635 4.52142 4.65702 4.71695 4.76934 4.84922 5.00591 5.08827 5.19705 5.36878 5.50053 5.59230 5.64884 5.92200 6.04120 6.22743 6.47881 6.81371 6.93960 7.36177 8.89233 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034038 B = 0.007821 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.421060 B = 3579.021304 C = 3946.514163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.124 3.876 4 C -0.204 4.204 5 C -0.084 4.084 6 C -0.151 4.151 7 C -0.130 4.130 8 C 0.032 3.968 9 N -0.510 5.510 10 C 0.050 3.950 11 C 0.223 3.777 12 C -0.527 4.527 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.266 1.266 20 H 0.062 0.938 21 H 0.071 0.929 22 H 0.109 0.891 23 H 0.160 0.840 24 H 0.164 0.836 25 H 0.147 0.853 26 H 0.108 0.892 27 H 0.018 0.982 28 H 0.065 0.935 29 H 0.068 0.932 30 H -0.031 1.031 31 H -0.010 1.010 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.634 6.878 -7.717 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.078 3.922 4 C -0.222 4.222 5 C -0.101 4.101 6 C -0.170 4.170 7 C -0.150 4.150 8 C -0.063 4.063 9 N -0.232 5.232 10 C -0.097 4.097 11 C 0.098 3.902 12 C -0.565 4.565 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.798 3.202 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.190 1.190 20 H 0.081 0.919 21 H 0.090 0.910 22 H 0.128 0.872 23 H 0.177 0.823 24 H 0.182 0.818 25 H 0.164 0.836 26 H 0.126 0.874 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.087 0.913 30 H -0.013 1.013 31 H 0.008 0.992 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.773 6.277 -7.549 15.329 hybrid contribution 1.128 -0.049 0.450 1.216 sum -10.645 6.228 -7.098 14.230 Atomic orbital electron populations 1.23336 0.77143 1.05126 1.02183 1.86268 1.22748 1.26796 1.88260 1.19213 0.90708 0.85524 0.96778 1.21501 1.01122 0.91326 1.08295 1.21332 0.94148 0.97891 0.96765 1.21233 0.94669 0.97817 1.03249 1.21615 1.00010 0.93095 1.00269 1.18734 0.91451 0.90065 1.06004 1.59638 1.26266 1.33483 1.03786 1.22197 0.96057 1.00662 0.90788 1.19324 0.88645 0.95759 0.86479 1.21456 1.26378 0.98311 1.10380 0.91841 1.25967 0.96960 1.01858 0.94901 1.70100 1.37047 1.36085 1.14206 0.85311 0.78702 0.78712 0.77453 1.19418 1.20523 1.19009 0.91923 0.91015 0.87240 0.82284 0.81836 0.83569 0.87373 0.96380 0.91603 0.91344 1.01293 0.99185 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -12.19 10.24 -93.69 -0.96 -13.15 16 3 C 0.12 4.63 6.70 22.59 0.15 4.78 16 4 C -0.20 -5.60 9.04 22.35 0.20 -5.40 16 5 C -0.08 -2.05 10.04 22.28 0.22 -1.83 16 6 C -0.15 -4.38 10.04 22.27 0.22 -4.15 16 7 C -0.13 -4.96 8.66 22.38 0.19 -4.77 16 8 C 0.03 1.39 4.70 38.22 0.18 1.57 16 9 N -0.51 -25.21 4.48 -723.91 -3.24 -28.45 16 10 C 0.05 2.15 9.20 127.69 1.17 3.32 16 11 C 0.22 12.93 4.31 85.56 0.37 13.29 16 12 C -0.53 -31.65 8.46 25.60 0.22 -31.44 16 13 H 0.06 3.74 7.12 -2.91 -0.02 3.72 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 16 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H 0.06 1.26 7.66 -2.39 -0.02 1.24 16 21 H 0.07 1.29 7.67 -2.39 -0.02 1.27 16 22 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.16 3.15 6.30 -2.91 -0.02 3.14 16 24 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 25 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 26 H 0.11 4.35 7.14 -2.91 -0.02 4.33 16 27 H 0.02 0.74 7.35 -2.39 -0.02 0.72 16 28 H 0.07 2.95 6.76 -2.39 -0.02 2.93 16 29 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 30 H -0.03 -1.87 7.48 -2.39 -0.02 -1.89 16 31 H -0.01 -0.64 8.06 -2.39 -0.02 -0.66 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -72.82 271.52 3.72 -69.10 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.10 Total: 5.25 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.51 Total: -22.59 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.96 Total: -86.32 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.96 Total: -13.15 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.82 3.72 -69.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.299 kcal (2) G-P(sol) polarization free energy of solvation -72.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds