Wall clock time and date at job start Mon Mar 30 2020 02:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35896 * 117.00105 * 2 1 4 4 C 1.38821 * 120.01776 * 0.02562 * 3 2 1 5 5 C 1.38164 * 120.09215 * 179.97438 * 4 3 2 6 6 C 1.38167 * 120.13332 * 359.70501 * 5 4 3 7 7 C 1.38933 * 120.02821 * 0.55154 * 6 5 4 8 8 N 1.39670 * 120.04283 * 179.74974 * 7 6 5 9 9 C 1.46504 * 119.99656 * 179.72413 * 8 7 6 10 10 C 1.46499 * 119.99962 * 359.71840 * 8 7 6 11 11 C 1.50701 * 109.46992 * 90.00228 * 10 8 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.38574 * 120.02134 * 179.97438 * 3 2 1 20 20 H 1.09001 * 109.47294 * 60.00091 * 1 2 3 21 21 H 1.09004 * 109.47170 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47121 * 299.99716 * 1 2 3 23 23 H 1.07998 * 119.95013 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.93717 * 179.97438 * 5 4 3 25 25 H 1.07999 * 119.98727 * 180.27381 * 6 5 4 26 26 H 1.09000 * 109.46899 * 269.99383 * 9 8 7 27 27 H 1.08992 * 109.47334 * 29.99346 * 9 8 7 28 28 H 1.08994 * 109.46680 * 149.99970 * 9 8 7 29 29 H 1.09002 * 109.47391 * 330.00219 * 10 8 7 30 30 H 1.09001 * 109.46813 * 210.00275 * 10 8 7 31 31 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 32 32 H 1.08004 * 120.06134 * 0.04727 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9159 3.6072 0.0011 6 6 3.2954 3.6845 0.0072 7 6 4.0569 2.5224 0.0013 8 7 5.4514 2.6002 0.0023 9 6 6.2534 1.3742 0.0021 10 6 6.1121 3.9078 0.0032 11 6 6.3377 4.3555 1.4244 12 1 6.0211 3.7286 2.2448 13 6 6.9494 5.5650 1.6773 14 7 7.3354 6.3282 0.6782 15 14 7.2297 6.1196 3.4389 16 1 8.5534 5.6348 3.9057 17 1 7.1953 7.6029 3.5023 18 1 6.1634 5.5621 4.3090 19 6 3.4298 1.2838 0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2118 2.3182 0.0005 24 1 1.3256 4.5115 0.0011 25 1 3.7820 4.6486 0.0121 26 1 6.4517 1.0697 1.0298 27 1 5.7079 0.5832 -0.5123 28 1 7.1974 1.5577 -0.5110 29 1 5.4819 4.6337 -0.5107 30 1 7.0706 3.8309 -0.5101 31 1 7.7654 7.1794 0.8562 32 1 4.0193 0.3789 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049801868.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:12 Heat of formation + Delta-G solvation = -5.412369 kcal Electronic energy + Delta-G solvation = -14700.650060 eV Core-core repulsion = 12240.780591 eV Total energy + Delta-G solvation = -2459.869469 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.62127 -37.69169 -35.01195 -32.68544 -30.27022 -28.96750 -27.95119 -26.78520 -24.95030 -22.67247 -21.53673 -19.91417 -17.57891 -16.50037 -15.81297 -15.45486 -15.43265 -14.90577 -14.52381 -13.89550 -13.59654 -13.20600 -12.56844 -12.15856 -12.09976 -11.92088 -11.47701 -11.38596 -11.04944 -10.87767 -10.75262 -10.60438 -10.23263 -9.96066 -9.73605 -8.89162 -8.50075 -7.75916 -6.52364 -6.03426 -4.16830 2.11006 2.27397 3.26916 3.33609 3.38447 3.54726 4.20237 4.42224 4.53822 5.17489 5.22011 5.27663 5.45475 5.48215 5.63707 5.78753 6.02220 6.05610 6.10195 6.21740 6.32813 6.40998 6.89948 6.96356 7.02211 7.23625 7.27834 7.35417 7.81447 7.88418 8.15529 8.25779 8.45516 8.91954 9.49842 10.96057 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039464 B = 0.006890 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.339020 B = 4062.892821 C = 4305.271544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.325 6.325 3 C 0.161 3.839 4 C -0.287 4.287 5 C -0.042 4.042 6 C -0.217 4.217 7 C 0.271 3.729 8 N -0.611 5.611 9 C 0.098 3.902 10 C 0.248 3.752 11 C -0.531 4.531 12 H 0.060 0.940 13 C 0.062 3.938 14 N -0.896 5.896 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.252 4.252 20 H 0.051 0.949 21 H 0.091 0.909 22 H 0.052 0.948 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.134 0.866 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 -8.544 -2.059 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.239 6.239 3 C 0.116 3.884 4 C -0.308 4.308 5 C -0.061 4.061 6 C -0.239 4.239 7 C 0.163 3.837 8 N -0.316 5.316 9 C -0.046 4.046 10 C 0.129 3.871 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.140 4.140 14 N -0.535 5.535 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.276 4.276 20 H 0.070 0.930 21 H 0.109 0.891 22 H 0.070 0.930 23 H 0.131 0.869 24 H 0.133 0.867 25 H 0.152 0.848 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.214 -8.535 -2.107 12.735 hybrid contribution 0.012 0.563 1.054 1.195 sum -9.202 -7.972 -1.053 12.220 Atomic orbital electron populations 1.22917 0.79276 1.02897 1.01189 1.85991 1.20700 1.28018 1.89171 1.18563 0.91555 0.83367 0.94918 1.20718 0.98719 0.92441 1.18920 1.20579 0.93974 0.96286 0.95259 1.20847 0.93249 0.98253 1.11577 1.17563 0.84153 0.92413 0.89599 1.47113 1.01366 1.07657 1.75481 1.21500 0.95296 0.87178 1.00628 1.19340 0.92580 0.78101 0.97105 1.21579 1.38908 1.03852 0.92653 0.92217 1.24955 0.95349 0.96316 0.97429 1.69929 1.40607 1.12146 1.30777 0.86514 0.78624 0.77750 0.84701 1.20613 1.21083 1.19803 1.19679 0.91381 0.96880 1.19642 0.93008 0.89061 0.92972 0.86942 0.86707 0.84833 0.93912 0.92621 0.91914 0.94466 0.95036 0.92646 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.33 -5.14 10.49 -19.41 -0.20 -5.34 16 3 C 0.16 2.87 6.68 -39.24 -0.26 2.61 16 4 C -0.29 -4.79 9.04 -39.39 -0.36 -5.15 16 5 C -0.04 -0.74 10.03 -39.63 -0.40 -1.14 16 6 C -0.22 -4.51 9.20 -39.35 -0.36 -4.87 16 7 C 0.27 5.72 6.55 -83.81 -0.55 5.17 16 8 N -0.61 -13.39 2.99 -181.02 -0.54 -13.94 16 9 C 0.10 1.77 10.23 59.85 0.61 2.38 16 10 C 0.25 6.27 4.95 -5.19 -0.03 6.25 16 11 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 12 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 15 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.25 -4.83 9.14 -39.24 -0.36 -5.19 16 20 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 23 H 0.11 1.56 6.29 -52.49 -0.33 1.23 16 24 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 25 H 0.13 3.01 6.14 -52.49 -0.32 2.68 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.87 6.19 -51.93 -0.32 0.55 16 28 H 0.06 1.07 7.89 -51.93 -0.41 0.66 16 29 H 0.04 0.99 6.20 -51.93 -0.32 0.66 16 30 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.12 2.17 6.14 -52.48 -0.32 1.85 16 LS Contribution 270.65 15.07 4.08 4.08 Total: -1.00 -29.80 270.65 -6.13 -35.93 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.05 Total: -0.23 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -1.13 Total: -11.92 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.19 Total: -38.89 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.20 Total: -5.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.80 -6.13 -35.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049801868.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.517 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds