Wall clock time and date at job start Mon Mar 30 2020 02:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36000 * 116.99977 * 2 1 4 4 C 1.38702 * 119.98257 * 180.02562 * 3 2 1 5 5 C 1.38113 * 120.01972 * 180.02562 * 4 3 2 6 6 C 1.38865 * 119.97890 * 359.97201 * 5 4 3 7 7 N 1.39939 * 120.01675 * 180.02562 * 6 5 4 8 8 C 1.46501 * 120.00198 * 0.02562 * 7 6 5 9 9 C 1.46506 * 119.99704 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46928 * 90.00421 * 9 7 6 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 7 12 12 C 1.37873 * 119.99865 * 179.97438 * 10 9 7 13 13 N 1.31514 * 120.00518 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46922 * 90.00621 * 14 12 10 16 16 H 1.48500 * 109.47411 * 210.00442 * 14 12 10 17 17 H 1.48494 * 109.47378 * 330.00637 * 14 12 10 18 18 C 1.38860 * 119.96067 * 0.27951 * 6 5 4 19 19 C 1.38109 * 119.98393 * 359.47101 * 18 6 5 20 20 H 1.08993 * 109.47763 * 299.99971 * 1 2 3 21 21 H 1.09005 * 109.47350 * 60.00632 * 1 2 3 22 22 H 1.09010 * 109.46961 * 179.97438 * 1 2 3 23 23 H 1.07991 * 119.99080 * 0.02562 * 4 3 2 24 24 H 1.07991 * 120.01282 * 179.97438 * 5 4 3 25 25 H 1.08999 * 109.46532 * 269.99570 * 8 7 6 26 26 H 1.09000 * 109.46877 * 29.99595 * 8 7 6 27 27 H 1.09000 * 109.47251 * 149.99700 * 8 7 6 28 28 H 1.09004 * 109.47073 * 210.00249 * 9 7 6 29 29 H 1.09000 * 109.47212 * 330.00331 * 9 7 6 30 30 H 0.96992 * 120.00316 * 179.97438 * 13 12 10 31 31 H 1.08006 * 120.00648 * 179.70054 * 18 6 5 32 32 H 1.07999 * 119.99572 * 180.25537 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4315 1.2839 -0.0005 5 6 4.0593 2.5141 0.0000 6 6 3.3033 3.6790 0.0005 7 7 3.9386 4.9258 0.0005 8 6 5.4016 5.0026 -0.0006 9 6 3.1406 6.1545 0.0016 10 6 2.8682 6.5752 1.4228 11 1 3.2515 5.9866 2.2431 12 6 2.1305 7.7122 1.6757 13 7 1.6641 8.4293 0.6768 14 14 1.7922 8.2334 3.4374 15 1 2.8770 9.1336 3.9042 16 1 0.4929 8.9497 3.5009 17 1 1.7378 7.0313 4.3075 18 6 1.9167 3.6057 0.0063 19 6 1.2905 2.3748 0.0006 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0278 -0.0005 23 1 4.0193 0.3780 -0.0014 24 1 5.1378 2.5702 0.0000 25 1 5.7651 5.0213 1.0268 26 1 5.8107 4.1330 -0.5150 27 1 5.7175 5.9105 -0.5144 28 1 3.6887 6.9442 -0.5124 29 1 2.1959 5.9746 -0.5116 30 1 1.1449 9.2290 0.8548 31 1 1.3280 4.5112 0.0116 32 1 0.2120 2.3176 0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049801869.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:15 Heat of formation + Delta-G solvation = -21.766615 kcal Electronic energy + Delta-G solvation = -14686.081305 eV Core-core repulsion = 12225.502663 eV Total energy + Delta-G solvation = -2460.578642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.90606 -39.06035 -36.43563 -34.64265 -32.08419 -30.41979 -29.46040 -28.12898 -26.30814 -24.47277 -22.96909 -21.42616 -19.06551 -18.63574 -17.49740 -17.16890 -16.45188 -16.38830 -15.62389 -15.39292 -15.19024 -14.47213 -14.14155 -13.89198 -13.49097 -13.36517 -13.15885 -13.04647 -12.72658 -12.59471 -12.37915 -12.12051 -12.09237 -11.61863 -11.36634 -10.63450 -10.04480 -9.82338 -8.32587 -7.65263 -6.36764 0.52482 0.84634 1.36888 1.37786 1.48918 2.34585 2.56620 2.70013 3.04248 3.06698 4.00276 4.08197 4.37030 4.40908 4.46901 4.54328 4.62156 4.69896 4.77578 4.84200 4.94967 5.01628 5.16935 5.20008 5.34588 5.53733 5.61866 5.68283 5.85146 6.08831 6.48969 6.62784 6.84239 6.95317 7.35296 8.83672 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029778 B = 0.007567 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.058133 B = 3699.528192 C = 4256.952284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.336 6.336 3 C 0.043 3.957 4 C -0.103 4.103 5 C -0.174 4.174 6 C 0.182 3.818 7 N -0.634 5.634 8 C 0.100 3.900 9 C 0.266 3.734 10 C -0.542 4.542 11 H 0.048 0.952 12 C 0.013 3.987 13 N -0.927 5.927 14 Si 0.960 3.040 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.273 1.273 18 C -0.177 4.177 19 C -0.158 4.158 20 H 0.052 0.948 21 H 0.055 0.945 22 H 0.121 0.879 23 H 0.149 0.851 24 H 0.147 0.853 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.267 0.733 31 H 0.104 0.896 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -13.095 -1.370 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C -0.003 4.003 4 C -0.122 4.122 5 C -0.196 4.196 6 C 0.078 3.922 7 N -0.344 5.344 8 C -0.043 4.043 9 C 0.144 3.856 10 C -0.581 4.581 11 H 0.066 0.934 12 C -0.186 4.186 13 N -0.567 5.567 14 Si 0.785 3.215 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.198 1.198 18 C -0.200 4.200 19 C -0.177 4.177 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.139 0.861 23 H 0.166 0.834 24 H 0.165 0.835 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.332 -12.928 -1.423 13.075 hybrid contribution -0.688 1.092 0.798 1.518 sum 0.644 -11.836 -0.625 11.870 Atomic orbital electron populations 1.23199 0.77557 1.05065 1.01449 1.85973 1.22475 1.26428 1.90205 1.18814 0.92649 0.83994 1.04825 1.20346 0.91283 0.98060 1.02537 1.20669 1.00206 0.89736 1.09039 1.18155 0.91993 0.86257 0.95761 1.46901 1.05736 1.03126 1.78608 1.21591 0.79412 1.02517 1.00775 1.18789 0.90241 0.81219 0.95313 1.21806 1.33539 1.09218 0.93489 0.93353 1.25768 0.95225 0.96225 1.01431 1.70029 1.36809 1.17053 1.32794 0.85519 0.77889 0.78293 0.79772 1.19576 1.20376 1.19766 1.20636 0.93595 0.97680 1.08083 1.21084 1.00203 0.91318 1.05095 0.92924 0.92620 0.86053 0.83356 0.83535 0.94290 0.89663 0.92026 0.97102 0.97107 0.92384 0.87802 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.34 -9.68 10.50 -93.55 -0.98 -10.66 16 3 C 0.04 1.41 6.69 22.49 0.15 1.56 16 4 C -0.10 -3.21 9.98 22.35 0.22 -2.99 16 5 C -0.17 -5.83 9.21 22.39 0.21 -5.63 16 6 C 0.18 7.49 6.56 38.15 0.25 7.74 16 7 N -0.63 -27.81 3.00 -726.36 -2.18 -29.98 16 8 C 0.10 3.45 10.23 127.77 1.31 4.75 16 9 C 0.27 14.00 4.95 85.63 0.42 14.43 16 10 C -0.54 -30.60 9.39 25.60 0.24 -30.36 16 11 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 12 C 0.01 0.71 5.46 84.65 0.46 1.17 16 13 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16 14 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 C -0.18 -7.51 9.20 22.39 0.21 -7.30 16 19 C -0.16 -5.60 9.03 22.35 0.20 -5.40 16 20 H 0.05 1.07 7.66 -2.39 -0.02 1.05 16 21 H 0.06 1.09 7.66 -2.38 -0.02 1.07 16 22 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.15 3.71 8.06 -2.92 -0.02 3.69 16 24 H 0.15 4.08 6.14 -2.92 -0.02 4.07 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 2.33 6.20 -2.39 -0.01 2.32 16 27 H 0.06 2.07 7.89 -2.39 -0.02 2.05 16 28 H 0.01 0.61 7.89 -2.38 -0.02 0.59 16 29 H 0.01 0.62 6.21 -2.39 -0.01 0.60 16 30 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.10 4.98 6.15 -2.91 -0.02 4.96 16 32 H 0.14 4.15 6.29 -2.91 -0.02 4.13 16 Total: -1.00 -64.50 270.69 5.04 -59.46 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.11 Total: 9.58 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.78 Total: -20.45 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -1.89 Total: -84.14 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.98 Total: -10.66 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.50 5.04 -59.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049801869.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.694 kcal (2) G-P(sol) polarization free energy of solvation -64.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds