Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47409 * 2 1 4 4 O 1.42901 * 109.46894 * 120.00076 * 2 1 3 5 5 C 1.53001 * 109.46961 * 239.99900 * 2 1 3 6 6 N 1.46500 * 109.47327 * 180.02562 * 5 2 1 7 7 C 1.38852 * 120.00232 * 180.02562 * 6 5 2 8 8 C 1.39565 * 119.84166 * 359.72975 * 7 6 5 9 9 C 1.36340 * 120.16070 * 179.71776 * 8 7 6 10 10 C 1.40892 * 119.83447 * 0.55232 * 9 8 7 11 11 C 1.41139 * 120.15468 * 179.69795 * 10 9 8 12 12 H 1.07992 * 119.99856 * 204.62228 * 11 10 9 13 13 C 1.39862 * 119.99885 * 24.62547 * 11 10 9 14 14 N 1.30900 * 120.00049 * 17.96580 * 13 11 10 15 15 Si 1.86799 * 119.99939 * 197.96071 * 13 11 10 16 16 H 1.48505 * 109.47084 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.47087 * 120.00059 * 15 13 11 18 18 H 1.48499 * 109.47674 * 240.00102 * 15 13 11 19 19 C 1.40888 * 119.68761 * 359.72190 * 10 9 8 20 20 C 1.36333 * 119.83545 * 359.97438 * 19 10 9 21 21 H 1.08999 * 109.47092 * 59.99924 * 1 2 3 22 22 H 1.08996 * 109.47409 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46789 * 300.00001 * 1 2 3 24 24 H 0.96691 * 114.00246 * 299.99823 * 4 2 1 25 25 H 1.08996 * 109.47141 * 300.00264 * 5 2 1 26 26 H 1.08999 * 109.47074 * 60.00165 * 5 2 1 27 27 H 0.97004 * 119.99598 * 359.97438 * 6 5 2 28 28 H 1.07997 * 119.92048 * 359.97438 * 8 7 6 29 29 H 1.08002 * 120.08592 * 180.27406 * 9 8 7 30 30 H 0.97005 * 119.99822 * 180.02562 * 14 13 11 31 31 H 1.07998 * 120.07885 * 179.97438 * 19 10 9 32 32 H 1.08008 * 119.91499 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7219 -1.2490 7 6 4.1992 -1.3228 -2.2906 8 6 3.4981 -1.9302 -3.3333 9 6 4.1731 -2.5171 -4.3622 10 6 5.5820 -2.5196 -4.3653 11 6 6.2877 -3.1308 -5.4238 12 1 7.2938 -3.4899 -5.2656 13 6 5.6839 -3.2713 -6.6775 14 7 4.6364 -2.5487 -6.9842 15 14 6.3725 -4.4901 -7.9144 16 1 7.5504 -5.1785 -7.3280 17 1 5.3312 -5.4934 -8.2531 18 1 6.7828 -3.7679 -9.1454 19 6 6.2831 -1.9095 -3.3064 20 6 5.5949 -1.3210 -2.2873 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7210 -0.2702 1.9979 25 1 1.6766 -1.7489 -1.2492 26 1 1.6767 -0.2074 -2.1392 27 1 3.9900 -0.3018 -0.5215 28 1 2.4181 -1.9317 -3.3272 29 1 3.6293 -2.9830 -5.1707 30 1 4.2175 -2.6464 -7.8537 31 1 7.3631 -1.9081 -3.3021 32 1 6.1311 -0.8532 -1.4747 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = -36.543166 kcal Electronic energy + Delta-G solvation = -14385.490083 eV Core-core repulsion = 11924.270681 eV Total energy + Delta-G solvation = -2461.219402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.28769 -37.29867 -34.67606 -32.92031 -31.14796 -29.39469 -28.63388 -25.93176 -23.72619 -21.86576 -20.57435 -19.82982 -17.47061 -17.15279 -16.09330 -15.32474 -14.91358 -14.55477 -13.88360 -13.32546 -13.14364 -12.75704 -12.55269 -12.43553 -12.09902 -11.84816 -11.60926 -11.25384 -11.00692 -10.82047 -10.63479 -10.42868 -10.08318 -9.63720 -9.23469 -9.17476 -8.46389 -7.43580 -6.59232 -6.31551 -3.97682 2.94708 3.15486 3.18623 3.24201 3.40118 4.09597 4.15636 4.36096 4.81826 4.86586 5.09357 5.15970 5.55741 5.63362 5.86938 5.92270 6.04637 6.17950 6.33869 6.38312 6.98900 6.99861 7.25745 7.41479 7.57376 7.62831 7.75094 7.90898 8.20837 8.35584 8.56061 8.78410 8.87585 9.11423 9.21260 10.42443 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058406 B = 0.005613 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.287188 B = 4987.481754 C = 5335.509086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.090 3.910 3 H 0.057 0.943 4 O -0.560 6.560 5 C 0.146 3.854 6 N -0.756 5.756 7 C 0.095 3.905 8 C -0.167 4.167 9 C -0.124 4.124 10 C 0.072 3.928 11 C -0.467 4.467 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.810 5.810 15 Si 0.902 3.098 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.277 1.277 19 C -0.185 4.185 20 C -0.160 4.160 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.372 0.628 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.387 0.613 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.275 0.725 31 H 0.091 0.909 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 4.186 9.208 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.031 3.969 3 H 0.074 0.926 4 O -0.365 6.365 5 C 0.020 3.980 6 N -0.392 5.392 7 C -0.003 4.003 8 C -0.188 4.188 9 C -0.144 4.144 10 C 0.069 3.931 11 C -0.498 4.498 12 H 0.091 0.909 13 C -0.140 4.140 14 N -0.437 5.437 15 Si 0.727 3.273 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.203 1.203 19 C -0.205 4.205 20 C -0.182 4.182 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.218 0.782 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.219 0.781 28 H 0.105 0.895 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.959 3.794 8.467 11.598 hybrid contribution 0.062 0.093 -0.009 0.112 sum -6.897 3.887 8.458 11.585 Atomic orbital electron populations 1.22443 0.96068 1.03098 1.02486 1.22066 0.92929 0.95511 0.86375 0.92552 1.86643 1.76917 1.57368 1.15578 1.21047 0.83259 0.99586 0.94089 1.43723 1.03006 1.66866 1.25619 1.17385 0.90689 1.01736 0.90458 1.20086 0.97080 1.05405 0.96278 1.20930 0.94631 1.01507 0.97282 1.17500 0.91862 0.91554 0.92165 1.19391 1.01130 1.34999 0.94308 0.90932 1.25784 0.94446 0.94744 0.99053 1.69870 1.19358 1.32820 1.21674 0.86379 0.79875 0.81045 0.80020 1.18639 1.19998 1.20313 1.20546 0.97479 1.04704 0.97820 1.19806 0.91683 1.06642 1.00111 0.91305 0.91535 0.92321 0.78215 0.92972 0.92265 0.78054 0.89498 0.86390 0.91454 0.89049 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.53 37.16 0.35 -1.34 16 2 C 0.09 1.07 3.67 -26.73 -0.10 0.97 16 3 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 4 O -0.56 -6.88 13.06 -35.23 -0.46 -7.34 16 5 C 0.15 2.31 4.58 -4.04 -0.02 2.29 16 6 N -0.76 -14.28 5.59 -58.50 -0.33 -14.61 16 7 C 0.09 2.18 6.67 -83.69 -0.56 1.62 16 8 C -0.17 -4.07 9.23 -39.77 -0.37 -4.44 16 9 C -0.12 -3.35 8.64 -39.26 -0.34 -3.69 16 10 C 0.07 2.01 5.57 -106.79 -0.60 1.42 16 11 C -0.47 -13.01 9.03 -37.87 -0.34 -13.36 16 12 H 0.07 1.96 7.91 -52.49 -0.41 1.54 16 13 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 14 N -0.81 -21.95 10.96 55.54 0.61 -21.34 16 15 Si 0.90 19.59 29.60 -169.99 -5.03 14.56 16 16 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 C -0.19 -4.76 9.74 -39.27 -0.38 -5.14 16 20 C -0.16 -3.78 9.82 -39.77 -0.39 -4.17 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.37 2.73 9.08 45.56 0.41 3.14 16 25 H 0.05 0.89 7.92 -51.93 -0.41 0.48 16 26 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 27 H 0.39 6.76 8.35 -40.82 -0.34 6.42 16 28 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 29 H 0.12 3.30 6.16 -52.49 -0.32 2.97 16 30 H 0.27 6.79 8.30 -40.82 -0.34 6.45 16 31 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 273.15 15.07 4.12 4.12 Total: -1.00 -30.51 273.15 -7.43 -37.93 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -3.51 Total: 10.64 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -2.83 Total: -23.96 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.28 Total: -35.95 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.46 Total: -7.34 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.51 -7.43 -37.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.391 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds