Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47409 * 2 1 4 4 O 1.42901 * 109.46894 * 120.00076 * 2 1 3 5 5 C 1.53001 * 109.46961 * 239.99900 * 2 1 3 6 6 N 1.46500 * 109.47327 * 180.02562 * 5 2 1 7 7 C 1.38852 * 120.00232 * 180.02562 * 6 5 2 8 8 C 1.39565 * 119.84166 * 359.72975 * 7 6 5 9 9 C 1.36340 * 120.16070 * 179.71776 * 8 7 6 10 10 C 1.40892 * 119.83447 * 0.55232 * 9 8 7 11 11 C 1.41139 * 120.15468 * 179.69795 * 10 9 8 12 12 H 1.07992 * 119.99856 * 204.62228 * 11 10 9 13 13 C 1.39862 * 119.99885 * 24.62547 * 11 10 9 14 14 N 1.30900 * 120.00049 * 17.96580 * 13 11 10 15 15 Si 1.86799 * 119.99939 * 197.96071 * 13 11 10 16 16 H 1.48505 * 109.47084 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.47087 * 120.00059 * 15 13 11 18 18 H 1.48499 * 109.47674 * 240.00102 * 15 13 11 19 19 C 1.40888 * 119.68761 * 359.72190 * 10 9 8 20 20 C 1.36333 * 119.83545 * 359.97438 * 19 10 9 21 21 H 1.08999 * 109.47092 * 59.99924 * 1 2 3 22 22 H 1.08996 * 109.47409 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46789 * 300.00001 * 1 2 3 24 24 H 0.96691 * 114.00246 * 299.99823 * 4 2 1 25 25 H 1.08996 * 109.47141 * 300.00264 * 5 2 1 26 26 H 1.08999 * 109.47074 * 60.00165 * 5 2 1 27 27 H 0.97004 * 119.99598 * 359.97438 * 6 5 2 28 28 H 1.07997 * 119.92048 * 359.97438 * 8 7 6 29 29 H 1.08002 * 120.08592 * 180.27406 * 9 8 7 30 30 H 0.97005 * 119.99822 * 180.02562 * 14 13 11 31 31 H 1.07998 * 120.07885 * 179.97438 * 19 10 9 32 32 H 1.08008 * 119.91499 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7219 -1.2490 7 6 4.1992 -1.3228 -2.2906 8 6 3.4981 -1.9302 -3.3333 9 6 4.1731 -2.5171 -4.3622 10 6 5.5820 -2.5196 -4.3653 11 6 6.2877 -3.1308 -5.4238 12 1 7.2938 -3.4899 -5.2656 13 6 5.6839 -3.2713 -6.6775 14 7 4.6364 -2.5487 -6.9842 15 14 6.3725 -4.4901 -7.9144 16 1 7.5504 -5.1785 -7.3280 17 1 5.3312 -5.4934 -8.2531 18 1 6.7828 -3.7679 -9.1454 19 6 6.2831 -1.9095 -3.3064 20 6 5.5949 -1.3210 -2.2873 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7210 -0.2702 1.9979 25 1 1.6766 -1.7489 -1.2492 26 1 1.6767 -0.2074 -2.1392 27 1 3.9900 -0.3018 -0.5215 28 1 2.4181 -1.9317 -3.3272 29 1 3.6293 -2.9830 -5.1707 30 1 4.2175 -2.6464 -7.8537 31 1 7.3631 -1.9081 -3.3021 32 1 6.1311 -0.8532 -1.4747 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = -57.922566 kcal Electronic energy + Delta-G solvation = -14386.417163 eV Core-core repulsion = 11924.270681 eV Total energy + Delta-G solvation = -2462.146482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89308 -38.59263 -36.34437 -34.68033 -32.31013 -31.35361 -30.35417 -27.41717 -25.46443 -23.35968 -22.19558 -21.56023 -19.15580 -18.38307 -17.80413 -16.84876 -16.64889 -15.68669 -15.59065 -14.81397 -14.58258 -14.41967 -14.10147 -13.76332 -13.53577 -13.38876 -13.07291 -12.79509 -12.73047 -12.53728 -12.27847 -11.74311 -11.56447 -11.20861 -11.08005 -10.94148 -10.30212 -9.41836 -8.55019 -8.16390 -6.00644 1.09752 1.17527 1.40704 1.55224 1.58347 2.28207 2.84248 2.88109 3.34933 3.84658 3.95084 4.16867 4.23576 4.43985 4.49866 4.66787 4.74448 4.96308 5.02511 5.04715 5.13642 5.26147 5.29714 5.45509 5.68175 5.79559 5.95727 6.18610 6.38519 6.66670 6.85799 6.94330 7.08364 7.15004 7.31732 8.48961 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.058406 B = 0.005613 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.287188 B = 4987.481754 C = 5335.509086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 H 0.071 0.929 4 O -0.582 6.582 5 C 0.136 3.864 6 N -0.748 5.748 7 C 0.108 3.892 8 C -0.177 4.177 9 C -0.143 4.143 10 C 0.034 3.966 11 C -0.506 4.506 12 H 0.068 0.932 13 C 0.032 3.968 14 N -0.843 5.843 15 Si 0.978 3.022 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.267 1.267 19 C -0.195 4.195 20 C -0.167 4.167 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.394 0.606 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.397 0.603 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.282 0.718 31 H 0.098 0.902 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 4.820 10.320 13.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.040 3.960 3 H 0.089 0.911 4 O -0.391 6.391 5 C 0.011 3.989 6 N -0.383 5.383 7 C 0.009 3.991 8 C -0.199 4.199 9 C -0.163 4.163 10 C 0.031 3.969 11 C -0.537 4.537 12 H 0.086 0.914 13 C -0.180 4.180 14 N -0.471 5.471 15 Si 0.799 3.201 16 H -0.184 1.184 17 H -0.191 1.191 18 H -0.192 1.192 19 C -0.215 4.215 20 C -0.189 4.189 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.102 0.898 24 H 0.244 0.756 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.231 0.769 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.599 4.461 9.638 13.059 hybrid contribution 0.186 -0.009 -0.180 0.259 sum -7.413 4.451 9.458 12.815 Atomic orbital electron populations 1.22394 0.93976 1.03057 1.04068 1.21936 0.94343 0.95125 0.84587 0.91128 1.86573 1.77449 1.58237 1.16805 1.21282 0.81251 0.99540 0.96806 1.43805 1.04435 1.65565 1.24452 1.17530 0.90918 1.00021 0.90653 1.20243 0.98046 1.05441 0.96176 1.20869 0.94645 1.02894 0.97924 1.17839 0.92546 0.93122 0.93401 1.19620 1.01520 1.36993 0.95590 0.91365 1.26626 0.94702 0.96054 1.00616 1.69927 1.20575 1.33975 1.22637 0.85234 0.79165 0.78370 0.77308 1.18430 1.19117 1.19237 1.20766 0.98082 1.04654 0.97983 1.20108 0.92183 1.06273 1.00372 0.90755 0.92392 0.89758 0.75597 0.94345 0.92054 0.76906 0.87808 0.88183 0.90729 0.88347 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 9.53 71.98 0.69 -2.05 16 2 C 0.10 2.05 3.67 30.60 0.11 2.16 16 3 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 4 O -0.58 -12.58 13.06 -148.98 -1.95 -14.53 16 5 C 0.14 4.06 4.58 86.38 0.40 4.45 16 6 N -0.75 -26.70 5.59 -339.00 -1.90 -28.59 16 7 C 0.11 4.89 6.67 38.67 0.26 5.15 16 8 C -0.18 -8.69 9.23 22.15 0.20 -8.49 16 9 C -0.14 -8.01 8.64 22.48 0.19 -7.81 16 10 C 0.03 1.94 5.57 -21.27 -0.12 1.83 16 11 C -0.51 -29.14 9.03 23.38 0.21 -28.93 16 12 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 13 C 0.03 1.70 5.13 85.22 0.44 2.14 16 14 N -0.84 -46.87 10.96 21.81 0.24 -46.63 16 15 Si 0.98 40.77 29.60 68.60 2.03 42.80 16 16 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 17 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 19 C -0.19 -10.12 9.74 22.47 0.22 -9.90 16 20 C -0.17 -7.72 9.82 22.15 0.22 -7.50 16 21 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.39 4.45 9.08 -74.06 -0.67 3.78 16 25 H 0.04 1.26 7.92 -2.39 -0.02 1.24 16 26 H 0.06 1.82 7.94 -2.39 -0.02 1.80 16 27 H 0.40 12.75 8.35 -92.70 -0.77 11.97 16 28 H 0.10 4.62 6.68 -2.91 -0.02 4.60 16 29 H 0.10 5.85 6.16 -2.91 -0.02 5.83 16 30 H 0.28 14.20 8.30 -92.70 -0.77 13.43 16 31 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 32 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -66.64 273.15 0.93 -65.71 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.32 Total: 30.19 kcal Atomic # 6 Polarization: -51.77 SS G_CDS: 2.82 Total: -48.95 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -1.66 Total: -75.22 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -1.95 Total: -14.53 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -66.64 0.93 -65.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.791 kcal (2) G-P(sol) polarization free energy of solvation -66.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds