Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46792 * 2 1 4 4 C 1.35902 * 117.00035 * 179.97438 * 3 2 1 5 5 C 1.38746 * 120.05704 * 0.02957 * 4 3 2 6 6 C 1.38120 * 119.94882 * 179.97438 * 5 4 3 7 7 C 1.38287 * 120.05107 * 359.97438 * 6 5 4 8 8 C 1.38239 * 120.11591 * 359.74620 * 7 6 5 9 9 C 1.38173 * 120.05191 * 0.50861 * 8 7 6 10 10 C 1.50696 * 120.02682 * 179.77023 * 9 8 7 11 11 H 1.09001 * 109.47545 * 144.72527 * 10 9 8 12 12 N 1.46900 * 109.47209 * 24.72225 * 10 9 8 13 13 C 1.50706 * 109.47259 * 264.72187 * 10 9 8 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00102 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 H 1.09000 * 109.46778 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47375 * 299.99305 * 1 2 3 23 23 H 1.08991 * 109.47466 * 59.99953 * 1 2 3 24 24 H 1.08997 * 109.47409 * 240.00532 * 2 1 3 25 25 H 1.08997 * 109.47214 * 119.99683 * 2 1 3 26 26 H 1.08010 * 120.02573 * 359.94962 * 5 4 3 27 27 H 1.07994 * 119.97642 * 179.97438 * 6 5 4 28 28 H 1.08004 * 119.93779 * 180.02562 * 7 6 5 29 29 H 1.08006 * 119.97915 * 180.25172 * 8 7 6 30 30 H 1.00900 * 111.00100 * 299.99420 * 12 10 9 31 31 H 1.00898 * 111.00378 * 63.95632 * 12 10 9 32 32 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4260 0.0004 6 6 5.5688 0.6097 0.0005 7 6 6.0960 1.8881 0.0000 8 6 5.2550 2.9852 -0.0057 9 6 3.8849 2.8068 -0.0004 10 6 2.9686 4.0032 -0.0014 11 1 2.0795 3.7795 -0.5911 12 7 3.6676 5.1548 -0.5870 13 6 2.5642 4.3274 1.4137 14 1 2.9341 3.7274 2.2320 15 6 1.7220 5.3900 1.6637 16 7 1.2712 6.1204 0.6672 17 14 1.2202 5.7915 3.4177 18 1 -0.0197 5.0494 3.7600 19 1 2.3079 5.3935 4.3471 20 1 0.9736 7.2508 3.5403 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7886 -0.5727 0.0008 27 1 6.2280 -0.2458 0.0008 28 1 7.1668 2.0296 -0.0004 29 1 5.6692 3.9827 -0.0101 30 1 4.4960 5.3823 -0.0578 31 1 3.8924 4.9869 -1.5562 32 1 1.5315 5.9117 -0.2436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071500704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = -18.451545 kcal Electronic energy + Delta-G solvation = -15110.773768 eV Core-core repulsion = 12650.338877 eV Total energy + Delta-G solvation = -2460.434890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71610 -37.15186 -34.79311 -31.67288 -31.38116 -29.40903 -28.83192 -25.53477 -23.68195 -22.51127 -21.24273 -20.04341 -17.73682 -16.71651 -15.70759 -15.53385 -15.16109 -14.38924 -14.00586 -13.62712 -13.27357 -13.04173 -12.91500 -12.35687 -12.06381 -11.88683 -11.54425 -11.22928 -11.07142 -10.66624 -10.43349 -10.39437 -10.06573 -9.91707 -8.86895 -8.25525 -8.13866 -7.48765 -7.38443 -6.06661 -3.87284 1.86805 2.00221 3.52529 3.56417 3.71184 3.72178 4.31812 4.70033 5.13590 5.14778 5.27877 5.34965 5.43528 5.51803 5.55615 5.71186 5.84259 6.01013 6.05394 6.15278 6.19130 6.29599 6.58449 6.79669 6.85910 7.00714 7.33814 7.40574 7.99655 8.13919 8.40516 8.76317 8.85144 9.17111 9.94565 11.33204 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.011038 C = 0.008579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.228848 B = 2536.189682 C = 3262.840335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.294 6.294 4 C 0.130 3.870 5 C -0.215 4.215 6 C -0.109 4.109 7 C -0.159 4.159 8 C -0.098 4.098 9 C -0.096 4.096 10 C 0.245 3.755 11 H 0.044 0.956 12 N -0.831 5.831 13 C -0.595 4.595 14 H 0.042 0.958 15 C 0.037 3.963 16 N -0.895 5.895 17 Si 1.066 2.934 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.286 1.286 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.325 0.675 31 H 0.301 0.699 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.281 -11.611 -2.159 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.207 6.207 4 C 0.084 3.916 5 C -0.234 4.234 6 C -0.127 4.127 7 C -0.177 4.177 8 C -0.116 4.116 9 C -0.098 4.098 10 C 0.136 3.864 11 H 0.062 0.938 12 N -0.359 5.359 13 C -0.634 4.634 14 H 0.061 0.939 15 C -0.172 4.172 16 N -0.529 5.529 17 Si 0.895 3.105 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.212 1.212 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.529 -9.989 -1.102 10.363 hybrid contribution 1.957 -2.174 -0.939 3.072 sum 4.486 -12.163 -2.041 13.124 Atomic orbital electron populations 1.21737 0.93079 1.01983 1.03970 1.22668 0.95856 0.83234 1.00357 1.86272 1.18900 1.27292 1.88207 1.18876 0.82299 0.93585 0.96856 1.21132 0.94496 0.97477 1.10291 1.20670 0.94121 0.96800 1.01150 1.20902 0.99062 0.92711 1.05070 1.20810 0.92362 0.98669 0.99793 1.20957 0.95148 0.95242 0.98495 1.18187 0.90078 0.81203 0.96890 0.93816 1.59462 1.30166 1.42550 1.03690 1.21605 1.33843 1.17788 0.90211 0.93918 1.25568 0.93547 0.92986 1.05110 1.70510 1.41901 1.38478 1.02050 0.83628 0.75827 0.76183 0.74846 1.21756 1.21826 1.21185 0.91050 0.91174 0.91605 0.92980 0.92709 0.86461 0.86890 0.86897 0.86093 0.86177 0.88812 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 37.16 0.38 -1.61 16 2 C 0.05 0.83 5.46 37.16 0.20 1.03 16 3 O -0.29 -6.15 9.27 -19.43 -0.18 -6.33 16 4 C 0.13 2.72 6.66 -39.22 -0.26 2.46 16 5 C -0.22 -3.74 9.04 -39.44 -0.36 -4.10 16 6 C -0.11 -1.75 10.04 -39.61 -0.40 -2.15 16 7 C -0.16 -2.67 10.04 -39.56 -0.40 -3.07 16 8 C -0.10 -1.91 9.27 -39.61 -0.37 -2.28 16 9 C -0.10 -2.14 5.00 -104.47 -0.52 -2.66 16 10 C 0.25 6.32 2.19 -70.02 -0.15 6.17 16 11 H 0.04 1.26 7.56 -51.93 -0.39 0.86 16 12 N -0.83 -19.58 7.39 -6.65 -0.05 -19.63 16 13 C -0.60 -17.22 8.71 -34.44 -0.30 -17.52 16 14 H 0.04 1.27 7.74 -52.48 -0.41 0.87 16 15 C 0.04 1.09 5.39 -17.82 -0.10 0.99 16 16 N -0.89 -27.68 13.51 55.43 0.75 -26.93 16 17 Si 1.07 26.18 29.90 -169.99 -5.08 21.09 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 25 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 26 H 0.12 1.71 6.30 -52.48 -0.33 1.38 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.12 2.22 6.29 -52.48 -0.33 1.89 16 30 H 0.32 7.30 7.21 -39.29 -0.28 7.02 16 31 H 0.30 6.28 9.06 -39.29 -0.36 5.92 16 32 H 0.29 8.97 6.40 -40.82 -0.26 8.71 16 LS Contribution 269.87 15.07 4.07 4.07 Total: -1.00 -32.41 269.87 -6.83 -39.24 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -4.06 Total: 11.23 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.27 Total: -22.74 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.70 Total: -46.56 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.18 Total: -6.33 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.41 -6.83 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.789 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds