Wall clock time and date at job start Mon Mar 30 2020 02:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47308 * 2 1 4 4 C 1.35896 * 117.00251 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05684 * 359.95691 * 4 3 2 6 6 C 1.38122 * 119.94946 * 180.02562 * 5 4 3 7 7 C 1.38295 * 120.05026 * 359.97438 * 6 5 4 8 8 C 1.38242 * 120.11401 * 0.02562 * 7 6 5 9 9 C 1.38169 * 120.05457 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.02482 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.46759 * 219.99532 * 10 9 8 12 12 N 1.46898 * 109.47500 * 339.99952 * 10 9 8 13 13 C 1.50708 * 109.47118 * 100.00235 * 10 9 8 14 14 H 1.07992 * 119.99774 * 359.97438 * 13 10 9 15 15 C 1.37870 * 119.99758 * 179.97438 * 13 10 9 16 16 N 1.31523 * 119.99826 * 179.97438 * 15 13 10 17 17 Si 1.86799 * 120.00380 * 0.02562 * 15 13 10 18 18 H 1.48496 * 109.47503 * 89.99911 * 17 15 13 19 19 H 1.48501 * 109.47323 * 210.00287 * 17 15 13 20 20 H 1.48507 * 109.47073 * 329.99629 * 17 15 13 21 21 H 1.09000 * 109.46922 * 299.99940 * 1 2 3 22 22 H 1.08996 * 109.46726 * 60.00153 * 1 2 3 23 23 H 1.09002 * 109.46827 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47342 * 239.99872 * 2 1 3 25 25 H 1.09001 * 109.47149 * 120.00040 * 2 1 3 26 26 H 1.08002 * 120.02760 * 0.04235 * 5 4 3 27 27 H 1.07997 * 119.97891 * 180.25368 * 6 5 4 28 28 H 1.07997 * 119.93892 * 179.97438 * 7 6 5 29 29 H 1.07998 * 119.97158 * 179.97438 * 8 7 6 30 30 H 1.00899 * 110.99689 * 60.00197 * 12 10 9 31 31 H 1.00899 * 110.99810 * 183.95561 * 12 10 9 32 32 H 0.96997 * 119.99750 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.2000 0.4258 0.0020 6 6 5.5689 0.6094 0.0030 7 6 6.0962 1.8879 0.0022 8 6 5.2552 2.9850 0.0008 9 6 3.8851 2.8066 -0.0003 10 6 2.9689 4.0031 -0.0025 11 1 2.1223 3.8136 0.6575 12 7 3.7040 5.1837 0.4707 13 6 2.4688 4.2504 -1.4025 14 1 2.7834 3.6059 -2.2099 15 6 1.6098 5.2995 -1.6524 16 7 1.1738 5.5156 -2.8742 17 14 1.0663 6.4147 -0.2558 18 1 2.0168 7.5485 -0.1291 19 1 -0.2937 6.9383 -0.5412 20 1 1.0435 5.6436 1.0132 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7886 -0.5728 0.0020 27 1 6.2281 -0.2461 0.0000 28 1 7.1669 2.0293 0.0034 29 1 5.6695 3.9824 0.0005 30 1 4.4942 5.3803 -0.1251 31 1 3.0949 5.9851 0.5397 32 1 0.5697 6.2539 -3.0501 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071500705.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:14 Heat of formation + Delta-G solvation = -32.659494 kcal Electronic energy + Delta-G solvation = -15136.993625 eV Core-core repulsion = 12675.942632 eV Total energy + Delta-G solvation = -2461.050993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.06696 -38.51074 -36.68641 -34.00018 -32.73603 -31.13388 -30.32219 -28.09407 -25.03505 -24.34714 -22.49273 -21.42206 -19.25131 -18.96812 -17.51009 -16.90949 -16.59008 -16.39258 -15.86529 -15.26601 -14.89546 -14.39315 -14.28522 -13.96305 -13.60233 -13.33625 -13.23440 -12.84142 -12.75574 -12.42624 -12.41838 -11.92942 -11.74593 -11.55881 -11.29222 -10.90071 -9.72655 -9.44052 -8.83435 -8.38228 -6.44206 0.58142 0.68289 1.20633 1.30052 1.39984 2.21420 2.49114 2.94371 3.01010 3.84930 4.01286 4.07776 4.15420 4.24398 4.34903 4.40510 4.55770 4.65810 4.76156 4.91191 4.94254 5.03245 5.21609 5.30023 5.42013 5.56984 5.68871 5.72026 6.03572 6.11117 6.41069 6.56283 6.67466 6.75597 7.20639 8.78554 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.011690 C = 0.008788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.640032 B = 2394.710887 C = 3185.422745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.106 3.894 5 C -0.216 4.216 6 C -0.095 4.095 7 C -0.161 4.161 8 C -0.088 4.088 9 C -0.104 4.104 10 C 0.227 3.773 11 H 0.031 0.969 12 N -0.837 5.837 13 C -0.530 4.530 14 H 0.024 0.976 15 C 0.015 3.985 16 N -0.941 5.941 17 Si 0.939 3.061 18 H -0.250 1.250 19 H -0.290 1.290 20 H -0.255 1.255 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.110 0.890 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.150 0.850 29 H 0.132 0.868 30 H 0.339 0.661 31 H 0.315 0.685 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -10.297 7.946 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.060 3.940 5 C -0.234 4.234 6 C -0.113 4.113 7 C -0.179 4.179 8 C -0.107 4.107 9 C -0.105 4.105 10 C 0.117 3.883 11 H 0.049 0.951 12 N -0.370 5.370 13 C -0.570 4.570 14 H 0.042 0.958 15 C -0.183 4.183 16 N -0.581 5.581 17 Si 0.764 3.236 18 H -0.175 1.175 19 H -0.217 1.217 20 H -0.179 1.179 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.128 0.872 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.165 0.835 27 H 0.174 0.826 28 H 0.167 0.833 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.131 0.869 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.034 -10.475 8.510 14.404 hybrid contribution -0.955 0.991 -1.006 1.705 sum 4.079 -9.484 7.504 12.763 Atomic orbital electron populations 1.21794 0.92221 1.04049 1.02466 1.23016 0.96653 0.81383 1.01925 1.86204 1.19480 1.30638 1.88546 1.19108 0.82846 0.94151 0.97850 1.21426 0.94904 0.97594 1.09483 1.21234 0.94017 0.98055 0.97955 1.21342 1.00634 0.92115 1.03813 1.20989 0.91320 1.00298 0.98072 1.19489 0.95130 0.92415 1.03445 1.17941 0.91116 0.87017 0.92226 0.95140 1.59714 1.13072 1.07109 1.57141 1.21714 1.28063 1.13066 0.94120 0.95765 1.25871 0.95229 0.99206 0.98025 1.70054 1.34421 1.31732 1.21854 0.85947 0.77996 0.79673 0.79992 1.17538 1.21715 1.17938 0.92169 0.93500 0.87181 0.91799 0.90424 0.83546 0.82578 0.83260 0.85039 0.84787 0.86913 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 10.28 71.98 0.74 -3.14 16 2 C 0.04 1.33 5.46 71.98 0.39 1.72 16 3 O -0.33 -14.27 9.37 -92.39 -0.87 -15.13 16 4 C 0.11 4.43 6.65 22.51 0.15 4.58 16 5 C -0.22 -6.96 9.04 22.37 0.20 -6.76 16 6 C -0.09 -2.65 10.04 22.26 0.22 -2.43 16 7 C -0.16 -4.86 10.04 22.28 0.22 -4.64 16 8 C -0.09 -3.36 9.25 22.25 0.21 -3.16 16 9 C -0.10 -4.69 5.04 -19.77 -0.10 -4.79 16 10 C 0.23 11.54 2.14 43.43 0.09 11.63 16 11 H 0.03 1.68 6.91 -2.39 -0.02 1.66 16 12 N -0.84 -37.57 8.62 -174.94 -1.51 -39.08 16 13 C -0.53 -31.61 9.29 25.60 0.24 -31.37 16 14 H 0.02 1.63 7.98 -2.91 -0.02 1.61 16 15 C 0.02 0.89 5.47 84.65 0.46 1.36 16 16 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 17 Si 0.94 45.08 24.61 68.60 1.69 46.77 16 18 H -0.25 -10.94 7.01 99.48 0.70 -10.24 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 20 H -0.25 -12.00 6.54 99.48 0.65 -11.35 16 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.75 7.67 -2.38 -0.02 1.73 16 25 H 0.08 1.88 7.66 -2.39 -0.02 1.86 16 26 H 0.15 3.74 6.30 -2.91 -0.02 3.73 16 27 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.13 4.69 6.25 -2.91 -0.02 4.67 16 30 H 0.34 14.22 7.28 -89.69 -0.65 13.57 16 31 H 0.32 14.15 4.30 -89.69 -0.39 13.76 16 32 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -71.99 263.12 2.47 -69.52 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.03 Total: 34.23 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 2.83 Total: -37.00 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -1.21 Total: -98.39 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.87 Total: -15.13 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.69 Total: 46.77 kcal Total: -71.99 2.47 -69.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500705.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.862 kcal (2) G-P(sol) polarization free energy of solvation -71.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds