Wall clock time and date at job start Mon Mar 30 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05870 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.94246 * 180.02562 * 5 4 3 7 7 C 1.38282 * 120.05845 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.10978 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.97060 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.46933 * 199.99756 * 9 8 7 11 11 N 1.46902 * 109.47055 * 319.99406 * 9 8 7 12 12 C 1.50701 * 109.47262 * 79.99515 * 9 8 7 13 13 H 1.07994 * 119.99793 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99917 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99940 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00085 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47232 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47314 * 119.99419 * 16 14 12 19 19 H 1.48492 * 109.47159 * 239.99921 * 16 14 12 20 20 C 1.38164 * 120.05768 * 359.67104 * 8 7 6 21 21 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 22 22 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 23 23 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 25 25 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 26 26 H 1.08002 * 120.02961 * 0.02562 * 5 4 3 27 27 H 1.08007 * 119.96925 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.94739 * 179.97438 * 7 6 5 29 29 H 1.00901 * 110.99645 * 296.04795 * 11 9 8 30 30 H 1.00896 * 111.00003 * 60.00411 * 11 9 8 31 31 H 0.96998 * 119.99667 * 179.97438 * 15 14 12 32 32 H 1.07998 * 120.03046 * 180.30014 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8878 0.0032 8 6 5.2551 2.9849 0.0043 9 6 5.8332 4.3767 0.0067 10 1 5.0804 5.0821 0.3588 11 7 7.0002 4.4206 0.8979 12 6 6.2547 4.7480 -1.3917 13 1 6.1180 4.0462 -2.2011 14 6 6.8157 5.9832 -1.6375 15 7 6.9825 6.8376 -0.6517 16 14 7.3388 6.4432 -3.3707 17 1 7.0466 5.3155 -4.2918 18 1 6.5907 7.6484 -3.8102 19 1 8.7955 6.7311 -3.3882 20 6 3.8850 2.8066 -0.0031 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.7886 -0.5729 -0.0003 27 1 6.2280 -0.2462 0.0012 28 1 7.1669 2.0293 0.0045 29 1 6.7325 4.2384 1.8535 30 1 7.7128 3.7749 0.5925 31 1 7.3776 7.7065 -0.8246 32 1 3.2284 3.6640 -0.0071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071500708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:19 Heat of formation + Delta-G solvation = -38.671370 kcal Electronic energy + Delta-G solvation = -14585.025809 eV Core-core repulsion = 12123.714122 eV Total energy + Delta-G solvation = -2461.311688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06596 -38.89626 -36.05673 -33.60393 -32.84365 -31.26224 -29.95199 -28.01054 -25.22871 -23.70472 -23.31185 -21.36132 -18.82357 -18.41669 -17.03265 -16.99360 -16.84130 -16.46600 -15.92444 -15.10620 -14.71695 -14.36420 -14.26707 -14.11250 -13.36637 -13.26201 -13.13171 -12.77800 -12.72723 -12.48728 -12.27494 -11.98817 -11.65234 -11.50162 -11.22075 -10.56776 -9.66034 -9.13722 -8.86783 -7.99292 -6.21108 0.50641 0.58037 1.42047 1.43733 1.54938 2.30677 2.46262 2.93391 3.24604 3.92801 4.02310 4.07394 4.21921 4.30378 4.39077 4.42897 4.51866 4.57686 4.74605 4.92956 4.94843 5.12874 5.21467 5.30684 5.40976 5.54939 5.74009 5.90607 5.93097 6.17537 6.56116 6.64317 7.09373 7.25211 7.51174 9.04622 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037209 B = 0.006665 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.334446 B = 4200.230230 C = 4445.879258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.339 6.339 4 C 0.123 3.877 5 C -0.222 4.222 6 C -0.075 4.075 7 C -0.169 4.169 8 C -0.055 4.055 9 C 0.257 3.743 10 H 0.008 0.992 11 N -0.817 5.817 12 C -0.542 4.542 13 H 0.044 0.956 14 C 0.034 3.966 15 N -0.880 5.880 16 Si 0.951 3.049 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.278 1.278 20 C -0.180 4.180 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.155 0.845 27 H 0.154 0.846 28 H 0.120 0.880 29 H 0.312 0.688 30 H 0.326 0.674 31 H 0.256 0.744 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 -15.603 1.689 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.254 6.254 4 C 0.078 3.922 5 C -0.241 4.241 6 C -0.093 4.093 7 C -0.187 4.187 8 C -0.058 4.058 9 C 0.147 3.853 10 H 0.026 0.974 11 N -0.344 5.344 12 C -0.580 4.580 13 H 0.062 0.938 14 C -0.169 4.169 15 N -0.516 5.516 16 Si 0.777 3.223 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.199 4.199 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.124 0.876 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.172 0.828 27 H 0.172 0.828 28 H 0.138 0.862 29 H 0.123 0.877 30 H 0.139 0.861 31 H 0.065 0.935 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.716 -14.501 1.525 16.497 hybrid contribution 0.121 -0.349 -0.620 0.722 sum -7.595 -14.850 0.905 16.704 Atomic orbital electron populations 1.21813 0.91414 1.04285 1.03008 1.23093 0.96960 0.80752 1.02323 1.86051 1.18842 1.31625 1.88833 1.19033 0.82726 0.93945 0.96545 1.21374 0.94123 0.98168 1.10432 1.21223 0.94870 0.96981 0.96216 1.20989 0.99848 0.92407 1.05503 1.21251 0.92824 0.98888 0.92843 1.17874 0.88634 0.86102 0.92668 0.97411 1.59015 1.12612 1.59380 1.03383 1.21107 1.43518 1.00606 0.92815 0.93754 1.25698 0.95077 0.96208 0.99940 1.70242 1.42312 1.06837 1.32216 0.85644 0.77988 0.77985 0.80714 1.19625 1.20635 1.20361 1.20356 0.95041 0.95151 1.09366 0.91990 0.92204 0.87644 0.91183 0.90865 0.82790 0.82798 0.86161 0.87737 0.86115 0.93471 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 10.28 71.98 0.74 -1.62 16 2 C 0.04 0.89 5.46 71.98 0.39 1.29 16 3 O -0.34 -10.79 10.14 -92.48 -0.94 -11.73 16 4 C 0.12 4.35 6.69 22.51 0.15 4.50 16 5 C -0.22 -6.54 9.04 22.36 0.20 -6.34 16 6 C -0.08 -2.27 10.04 22.25 0.22 -2.04 16 7 C -0.17 -6.38 9.29 22.28 0.21 -6.17 16 8 C -0.06 -2.46 4.88 -19.88 -0.10 -2.56 16 9 C 0.26 13.43 2.85 43.42 0.12 13.55 16 10 H 0.01 0.47 8.01 -2.38 -0.02 0.45 16 11 N -0.82 -39.48 8.36 -174.94 -1.46 -40.94 16 12 C -0.54 -30.90 8.70 25.60 0.22 -30.67 16 13 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 14 C 0.03 1.96 5.39 84.65 0.46 2.42 16 15 N -0.88 -52.69 12.77 21.45 0.27 -52.41 16 16 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 C -0.18 -7.65 9.61 22.37 0.21 -7.44 16 21 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 25 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 26 H 0.15 3.31 6.30 -2.91 -0.02 3.29 16 27 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 28 H 0.12 4.41 6.66 -2.91 -0.02 4.39 16 29 H 0.31 13.51 9.06 -89.69 -0.81 12.70 16 30 H 0.33 14.70 7.34 -89.70 -0.66 14.05 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.11 4.73 8.04 -2.91 -0.02 4.70 16 Total: -1.00 -67.00 273.61 2.39 -64.60 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.34 Total: 28.76 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 2.84 Total: -35.09 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -1.19 Total: -93.36 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.94 Total: -11.73 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.00 2.39 -64.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.933 kcal (2) G-P(sol) polarization free energy of solvation -66.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds