Wall clock time and date at job start Mon Mar 30 2020 02:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47382 * 2 1 4 4 C 1.35892 * 117.00429 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.05861 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.94474 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.05753 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.94613 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47545 * 340.00492 * 8 7 6 10 10 N 1.46900 * 109.47209 * 220.00189 * 8 7 6 11 11 C 1.50706 * 109.47259 * 100.00151 * 8 7 6 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.38272 * 120.11206 * 0.27988 * 7 6 5 20 20 C 1.38151 * 120.05163 * 359.44694 * 19 7 6 21 21 H 1.09002 * 109.47421 * 299.99718 * 1 2 3 22 22 H 1.08994 * 109.47078 * 60.00250 * 1 2 3 23 23 H 1.09005 * 109.47329 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46939 * 239.99689 * 2 1 3 25 25 H 1.09006 * 109.47094 * 120.00071 * 2 1 3 26 26 H 1.07999 * 120.02512 * 359.95745 * 5 4 3 27 27 H 1.08007 * 119.97083 * 180.02562 * 6 5 4 28 28 H 1.00900 * 111.00100 * 299.99420 * 10 8 7 29 29 H 1.00898 * 111.00378 * 63.95632 * 10 8 7 30 30 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 31 31 H 1.07998 * 119.97225 * 179.70534 * 19 7 6 32 32 H 1.08002 * 120.02759 * 180.27433 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8851 2.8067 0.0000 6 6 5.2550 2.9851 0.0011 7 6 6.0962 1.8878 0.0032 8 6 7.5901 2.0852 0.0050 9 1 7.8243 3.0899 -0.3470 10 7 8.2157 1.0968 -0.8835 11 6 8.1187 1.9077 1.4051 12 1 7.4405 1.6748 2.2128 13 6 9.4678 2.0427 1.6550 14 7 10.2935 2.3268 0.6715 15 14 10.1228 1.8233 3.3906 16 1 11.5950 2.0178 3.3923 17 1 9.4900 2.8226 4.2885 18 1 9.8043 0.4546 3.8706 19 6 5.5689 0.6095 -0.0016 20 6 4.1997 0.4259 0.0031 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.2284 3.6642 -0.0015 27 1 5.6692 3.9825 0.0012 28 1 8.0134 0.1567 -0.5780 29 1 7.9267 1.2363 -1.8401 30 1 9.9533 2.4411 -0.2296 31 1 6.2281 -0.2460 -0.0047 32 1 3.7884 -0.5727 0.0038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071500710.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:22 Heat of formation + Delta-G solvation = -23.914137 kcal Electronic energy + Delta-G solvation = -14572.128666 eV Core-core repulsion = 12111.456900 eV Total energy + Delta-G solvation = -2460.671766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.80398 -37.61013 -34.52261 -31.93662 -31.10913 -30.49592 -28.49287 -25.40736 -23.87816 -22.73902 -21.32959 -20.17090 -18.00463 -16.80528 -16.02168 -15.71829 -14.92854 -14.42684 -14.13422 -13.63190 -13.28982 -13.23560 -12.96924 -12.81132 -12.46426 -11.87027 -11.70076 -11.52122 -11.17293 -10.70899 -10.54458 -10.37291 -10.17726 -9.99116 -8.75127 -8.52670 -8.30471 -7.61063 -7.34458 -6.15381 -3.98524 1.82239 1.98995 3.37220 3.49625 3.50945 3.69771 4.29476 4.63907 4.82791 4.89335 5.12558 5.25139 5.29820 5.41897 5.47501 5.65409 5.75216 5.81445 5.92669 5.98334 6.13225 6.18665 6.44233 6.74057 6.90276 6.98256 7.25217 7.43240 7.75592 8.01709 8.32013 8.68059 8.78604 9.08164 9.85002 11.24103 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045992 B = 0.006179 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.655753 B = 4530.046194 C = 4688.241581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.099 3.901 5 C -0.152 4.152 6 C -0.085 4.085 7 C -0.099 4.099 8 C 0.239 3.761 9 H 0.037 0.963 10 N -0.830 5.830 11 C -0.607 4.607 12 H 0.045 0.955 13 C 0.038 3.962 14 N -0.891 5.891 15 Si 1.064 2.936 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.290 1.290 19 C -0.084 4.084 20 C -0.207 4.207 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.325 0.675 29 H 0.302 0.698 30 H 0.289 0.711 31 H 0.119 0.881 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.091 -3.997 -2.251 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.238 6.238 4 C 0.055 3.945 5 C -0.170 4.170 6 C -0.104 4.104 7 C -0.102 4.102 8 C 0.130 3.870 9 H 0.055 0.945 10 N -0.357 5.357 11 C -0.646 4.646 12 H 0.064 0.936 13 C -0.172 4.172 14 N -0.525 5.525 15 Si 0.893 3.107 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.217 1.217 19 C -0.103 4.103 20 C -0.225 4.225 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.134 -3.503 -1.137 13.640 hybrid contribution -2.430 -0.691 -0.990 2.713 sum -15.564 -4.193 -2.127 16.259 Atomic orbital electron populations 1.21760 0.93168 1.02518 1.03307 1.22665 0.95397 0.82736 1.01169 1.85996 1.19731 1.28495 1.89583 1.18831 0.81554 0.94282 0.99882 1.20345 0.95238 0.94262 1.07185 1.20922 0.91637 0.99265 0.98550 1.21418 1.00237 0.92206 0.96296 1.18315 0.82143 0.92453 0.94077 0.94509 1.59463 1.65791 1.06946 1.03524 1.21689 0.95209 1.56333 0.91386 0.93641 1.25624 0.93287 0.93384 1.04915 1.70555 1.38205 1.40724 1.03061 0.83647 0.76123 0.76284 0.74657 1.20894 1.21679 1.21707 1.20756 0.93508 0.97522 0.98465 1.21115 0.94525 0.97252 1.09639 0.91654 0.91702 0.90661 0.92444 0.92349 0.86128 0.85801 0.86206 0.88795 0.89793 0.86339 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.06 0.65 5.46 37.16 0.20 0.85 16 3 O -0.32 -5.01 10.14 -19.40 -0.20 -5.20 16 4 C 0.10 1.71 6.69 -39.22 -0.26 1.45 16 5 C -0.15 -2.69 9.99 -39.43 -0.39 -3.08 16 6 C -0.09 -1.66 9.66 -39.61 -0.38 -2.05 16 7 C -0.10 -2.12 4.89 -104.60 -0.51 -2.63 16 8 C 0.24 5.90 2.47 -70.02 -0.17 5.72 16 9 H 0.04 0.98 7.87 -51.93 -0.41 0.57 16 10 N -0.83 -19.01 7.62 -6.65 -0.05 -19.06 16 11 C -0.61 -16.99 8.70 -34.44 -0.30 -17.29 16 12 H 0.05 1.30 7.74 -52.48 -0.41 0.90 16 13 C 0.04 1.08 5.39 -17.82 -0.10 0.98 16 14 N -0.89 -26.94 13.51 55.43 0.75 -26.19 16 15 Si 1.06 25.42 29.90 -169.99 -5.08 20.34 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 19 C -0.08 -1.63 9.29 -39.60 -0.37 -2.00 16 20 C -0.21 -3.55 9.04 -39.43 -0.36 -3.91 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 25 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 26 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.12 2.29 8.03 -52.48 -0.42 1.87 16 28 H 0.32 7.16 7.33 -39.29 -0.29 6.87 16 29 H 0.30 6.11 9.06 -39.29 -0.36 5.76 16 30 H 0.29 8.73 6.40 -40.82 -0.26 8.47 16 31 H 0.12 2.23 6.65 -52.49 -0.35 1.88 16 32 H 0.12 1.69 6.30 -52.49 -0.33 1.36 16 LS Contribution 271.51 15.07 4.09 4.09 Total: -1.00 -31.07 271.51 -6.85 -37.92 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.10 Total: 11.00 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.26 Total: -22.89 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.70 Total: -45.25 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.20 Total: -5.20 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.07 -6.85 -37.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500710.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.005 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds