Wall clock time and date at job start Mon Mar 30 2020 02:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47382 * 2 1 4 4 C 1.35892 * 117.00429 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.05861 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.94474 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.05753 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.94613 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47545 * 340.00492 * 8 7 6 10 10 N 1.46900 * 109.47209 * 220.00189 * 8 7 6 11 11 C 1.50706 * 109.47259 * 100.00151 * 8 7 6 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.38272 * 120.11206 * 0.27988 * 7 6 5 20 20 C 1.38151 * 120.05163 * 359.44694 * 19 7 6 21 21 H 1.09002 * 109.47421 * 299.99718 * 1 2 3 22 22 H 1.08994 * 109.47078 * 60.00250 * 1 2 3 23 23 H 1.09005 * 109.47329 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46939 * 239.99689 * 2 1 3 25 25 H 1.09006 * 109.47094 * 120.00071 * 2 1 3 26 26 H 1.07999 * 120.02512 * 359.95745 * 5 4 3 27 27 H 1.08007 * 119.97083 * 180.02562 * 6 5 4 28 28 H 1.00900 * 111.00100 * 299.99420 * 10 8 7 29 29 H 1.00898 * 111.00378 * 63.95632 * 10 8 7 30 30 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 31 31 H 1.07998 * 119.97225 * 179.70534 * 19 7 6 32 32 H 1.08002 * 120.02759 * 180.27433 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8851 2.8067 0.0000 6 6 5.2550 2.9851 0.0011 7 6 6.0962 1.8878 0.0032 8 6 7.5901 2.0852 0.0050 9 1 7.8243 3.0899 -0.3470 10 7 8.2157 1.0968 -0.8835 11 6 8.1187 1.9077 1.4051 12 1 7.4405 1.6748 2.2128 13 6 9.4678 2.0427 1.6550 14 7 10.2935 2.3268 0.6715 15 14 10.1228 1.8233 3.3906 16 1 11.5950 2.0178 3.3923 17 1 9.4900 2.8226 4.2885 18 1 9.8043 0.4546 3.8706 19 6 5.5689 0.6095 -0.0016 20 6 4.1997 0.4259 0.0031 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.2284 3.6642 -0.0015 27 1 5.6692 3.9825 0.0012 28 1 8.0134 0.1567 -0.5780 29 1 7.9267 1.2363 -1.8401 30 1 9.9533 2.4411 -0.2296 31 1 6.2281 -0.2460 -0.0047 32 1 3.7884 -0.5727 0.0038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071500710.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:21 Heat of formation + Delta-G solvation = -44.384835 kcal Electronic energy + Delta-G solvation = -14573.016342 eV Core-core repulsion = 12111.456900 eV Total energy + Delta-G solvation = -2461.559442 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13302 -39.03097 -36.32079 -33.49172 -32.52061 -31.92075 -30.01383 -27.40440 -24.93722 -24.51732 -22.64088 -21.79728 -19.26886 -18.86251 -17.18811 -17.03228 -16.52007 -16.18593 -15.59455 -15.50230 -14.69583 -14.51534 -14.36669 -14.17926 -13.70985 -13.43284 -13.02403 -12.76314 -12.60871 -12.53654 -12.15044 -11.88266 -11.67151 -11.64122 -10.73900 -10.46836 -9.96586 -9.41164 -8.91359 -8.36751 -6.23782 0.37807 0.51235 1.56306 1.63667 1.83059 2.25902 2.62818 2.84404 3.32387 3.82461 3.91973 4.04029 4.15650 4.20678 4.22931 4.35255 4.45236 4.49466 4.63577 4.89979 4.93114 4.93845 5.16068 5.19084 5.32479 5.42911 5.79583 5.80758 5.96387 6.23381 6.47535 6.68837 6.78442 7.05381 7.67422 8.98659 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045992 B = 0.006179 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.655753 B = 4530.046194 C = 4688.241581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.106 3.894 5 C -0.154 4.154 6 C -0.095 4.095 7 C -0.128 4.128 8 C 0.243 3.757 9 H 0.007 0.993 10 N -0.836 5.836 11 C -0.616 4.616 12 H 0.034 0.966 13 C -0.011 4.011 14 N -0.919 5.919 15 Si 1.109 2.891 16 H -0.285 1.285 17 H -0.277 1.277 18 H -0.276 1.276 19 C -0.089 4.089 20 C -0.201 4.201 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.142 0.858 27 H 0.123 0.877 28 H 0.330 0.670 29 H 0.317 0.683 30 H 0.278 0.722 31 H 0.120 0.880 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.107 -5.159 -1.725 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.061 3.939 5 C -0.172 4.172 6 C -0.114 4.114 7 C -0.131 4.131 8 C 0.134 3.866 9 H 0.025 0.975 10 N -0.364 5.364 11 C -0.654 4.654 12 H 0.052 0.948 13 C -0.214 4.214 14 N -0.555 5.555 15 Si 0.933 3.067 16 H -0.210 1.210 17 H -0.202 1.202 18 H -0.201 1.201 19 C -0.108 4.108 20 C -0.220 4.220 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.120 0.880 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.160 0.840 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.185 -4.673 -0.623 15.900 hybrid contribution -1.982 -0.363 -1.207 2.349 sum -17.167 -5.036 -1.831 17.983 Atomic orbital electron populations 1.21794 0.90987 1.04249 1.03263 1.23067 0.97186 0.80944 1.02011 1.86017 1.18270 1.31183 1.89025 1.18953 0.82674 0.94087 0.98196 1.20536 0.94602 0.95609 1.06493 1.20973 0.92573 0.98854 0.98989 1.21128 0.98398 0.93873 0.99658 1.17984 0.84687 0.91234 0.92686 0.97533 1.59219 1.66127 1.06837 1.04263 1.21986 0.95177 1.55419 0.92831 0.94810 1.26965 0.94070 0.92625 1.07768 1.70672 1.38569 1.43178 1.03032 0.83040 0.75491 0.77263 0.70930 1.21038 1.20235 1.20119 1.20798 0.94730 0.96603 0.98666 1.21356 0.93410 0.98867 1.08334 0.91830 0.91643 0.88038 0.91338 0.91683 0.83991 0.85892 0.85638 0.87122 0.91033 0.86245 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.04 0.84 5.46 71.98 0.39 1.23 16 3 O -0.33 -9.26 10.14 -92.34 -0.94 -10.20 16 4 C 0.11 3.43 6.69 22.51 0.15 3.58 16 5 C -0.15 -5.23 9.99 22.37 0.22 -5.01 16 6 C -0.10 -3.73 9.66 22.25 0.21 -3.51 16 7 C -0.13 -5.52 4.89 -19.85 -0.10 -5.62 16 8 C 0.24 12.33 2.47 43.42 0.11 12.43 16 9 H 0.01 0.38 7.87 -2.39 -0.02 0.36 16 10 N -0.84 -38.96 7.62 -174.95 -1.33 -40.29 16 11 C -0.62 -34.99 8.70 25.60 0.22 -34.77 16 12 H 0.03 1.95 7.74 -2.91 -0.02 1.93 16 13 C -0.01 -0.62 5.39 84.65 0.46 -0.16 16 14 N -0.92 -56.59 13.51 21.45 0.29 -56.30 16 15 Si 1.11 51.24 29.90 68.60 2.05 53.29 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 C -0.09 -3.40 9.29 22.26 0.21 -3.19 16 20 C -0.20 -6.44 9.04 22.37 0.20 -6.24 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.07 1.22 7.67 -2.39 -0.02 1.20 16 25 H 0.06 1.21 7.66 -2.38 -0.02 1.20 16 26 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 27 H 0.12 4.68 8.03 -2.91 -0.02 4.65 16 28 H 0.33 14.66 7.33 -89.69 -0.66 14.00 16 29 H 0.32 13.04 9.06 -89.70 -0.81 12.23 16 30 H 0.28 17.29 6.40 -92.71 -0.59 16.70 16 31 H 0.12 4.41 6.65 -2.91 -0.02 4.39 16 32 H 0.15 3.74 6.30 -2.91 -0.02 3.72 16 Total: -1.00 -66.64 271.51 2.73 -63.91 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.16 Total: 32.15 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 2.82 Total: -42.56 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -1.04 Total: -96.59 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.94 Total: -10.20 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -66.64 2.73 -63.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500710.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.530 kcal (2) G-P(sol) polarization free energy of solvation -66.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds