Wall clock time and date at job start Mon Mar 30 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52061 * 109.46951 * 264.42186 * 3 2 1 5 5 H 1.09691 * 109.11888 * 302.25745 * 4 3 2 6 6 C 1.55238 * 110.85961 * 183.54804 * 4 3 2 7 7 C 1.55282 * 100.71938 * 199.33694 * 6 4 3 8 8 N 1.48121 * 103.41514 * 36.28545 * 7 6 4 9 9 C 1.48257 * 110.09889 * 93.50256 * 8 7 6 10 10 C 1.54980 * 102.55781 * 212.01836 * 9 8 7 11 11 C 1.55615 * 100.74968 * 39.18195 * 10 9 8 12 12 H 1.07972 * 107.86583 * 87.07229 * 11 10 9 13 13 C 1.51038 * 108.64206 * 207.00519 * 11 10 9 14 14 H 1.08003 * 119.99523 * 121.08601 * 13 11 10 15 15 C 1.37870 * 120.00054 * 301.08286 * 13 11 10 16 16 N 1.31515 * 120.00222 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99910 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47007 * 90.00213 * 17 15 13 19 19 H 1.48503 * 109.47077 * 210.00314 * 17 15 13 20 20 H 1.48499 * 109.46990 * 330.00285 * 17 15 13 21 21 N 1.46249 * 104.25725 * 325.41661 * 11 10 9 22 22 H 1.09004 * 109.47230 * 144.42584 * 3 2 1 23 23 H 1.09000 * 109.47514 * 24.42135 * 3 2 1 24 24 H 1.08895 * 110.62359 * 81.99436 * 6 4 3 25 25 H 1.08845 * 111.13652 * 317.24667 * 6 4 3 26 26 H 1.09289 * 109.91423 * 278.31333 * 7 6 4 27 27 H 1.08470 * 111.12041 * 156.05714 * 7 6 4 28 28 H 1.09459 * 110.87867 * 94.10491 * 9 8 7 29 29 H 1.09004 * 111.22567 * 330.86300 * 9 8 7 30 30 H 1.08659 * 111.04541 * 282.22864 * 10 9 8 31 31 H 1.08361 * 111.75675 * 156.52803 * 10 9 8 32 32 H 0.97002 * 119.99992 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1147 0.1402 1.4269 5 1 2.7125 1.0632 1.8623 6 6 4.6640 0.2340 1.4565 7 6 4.9479 -0.1431 2.9359 8 7 3.9252 -1.1734 3.2302 9 6 4.4813 -2.5265 2.9895 10 6 3.2374 -3.3236 2.5214 11 6 2.5273 -2.2595 1.6353 12 1 2.9361 -2.3322 0.6387 13 6 1.0454 -2.5513 1.6245 14 1 0.3458 -1.8061 1.9733 15 6 0.5858 -3.7689 1.1694 16 7 1.4378 -4.6765 0.7451 17 14 -1.2470 -4.1295 1.1554 18 1 -1.8250 -3.7055 -0.1450 19 1 -1.4664 -5.5862 1.3432 20 1 -1.9067 -3.3835 2.2570 21 7 2.8063 -0.9894 2.3045 22 1 2.9710 0.8367 -0.5979 23 1 2.9718 -0.9349 -0.4249 24 1 4.9908 1.2511 1.2452 25 1 5.1138 -0.4843 0.7736 26 1 4.8058 0.7308 3.5767 27 1 5.9526 -0.5345 3.0535 28 1 4.8834 -2.9531 3.9138 29 1 5.2486 -2.5059 2.2155 30 1 2.6081 -3.5954 3.3645 31 1 3.5136 -4.1876 1.9286 32 1 1.1145 -5.5333 0.4252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075579914.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:58 Heat of formation + Delta-G solvation = 56.256981 kcal Electronic energy + Delta-G solvation = -15737.205475 eV Core-core repulsion = 13312.302940 eV Total energy + Delta-G solvation = -2424.902534 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.06470 -37.40734 -35.81720 -34.47513 -33.02455 -30.29299 -29.02666 -27.35521 -24.76665 -22.36627 -22.09689 -20.87022 -18.73235 -17.92963 -17.51039 -16.62871 -16.28551 -15.62252 -15.18302 -14.59004 -14.41540 -14.20958 -13.89420 -13.78344 -13.26353 -13.06090 -13.02623 -12.70978 -12.62209 -12.40979 -12.17084 -12.05362 -11.80038 -11.69214 -11.44030 -11.13845 -10.49244 -9.83700 -8.71055 -8.15831 -6.17364 1.29646 1.32596 1.42504 2.06665 2.15328 2.35798 2.81709 3.14873 3.28634 3.55984 3.86848 3.97907 4.20884 4.29134 4.31971 4.49057 4.55325 4.68898 4.71233 4.78785 4.90077 5.05446 5.08375 5.15351 5.34400 5.46734 5.67148 5.76740 6.02913 6.26186 6.64316 6.73371 6.92941 6.97765 7.48607 8.91273 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.012723 C = 0.009704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.542949 B = 2200.295777 C = 2884.813071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.239 3.761 3 C -0.020 4.020 4 C 0.052 3.948 5 H 0.091 0.909 6 C -0.152 4.152 7 C 0.002 3.998 8 N -0.347 5.347 9 C 0.002 3.998 10 C -0.101 4.101 11 C 0.193 3.807 12 H 0.011 0.989 13 C -0.480 4.480 14 H 0.038 0.962 15 C 0.024 3.976 16 N -0.913 5.913 17 Si 0.930 3.070 18 H -0.287 1.287 19 H -0.276 1.276 20 H -0.282 1.282 21 N -0.374 5.374 22 H 0.163 0.837 23 H 0.101 0.899 24 H 0.122 0.878 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.696 8.852 -0.463 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.077 4.077 3 C -0.060 4.060 4 C -0.059 4.059 5 H 0.109 0.891 6 C -0.192 4.192 7 C -0.127 4.127 8 N -0.159 5.159 9 C -0.127 4.127 10 C -0.141 4.141 11 C 0.085 3.915 12 H 0.028 0.972 13 C -0.520 4.520 14 H 0.057 0.943 15 C -0.175 4.175 16 N -0.554 5.554 17 Si 0.758 3.242 18 H -0.214 1.214 19 H -0.201 1.201 20 H -0.207 1.207 21 N -0.187 5.187 22 H 0.181 0.819 23 H 0.119 0.881 24 H 0.141 0.859 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.365 8.850 0.310 12.889 hybrid contribution -0.031 -1.133 -1.286 1.714 sum 9.333 7.717 -0.975 12.150 Atomic orbital electron populations 1.81034 1.15192 1.11162 1.10228 1.29323 0.95759 0.91108 0.91545 1.19490 0.80537 1.07164 0.98808 1.22834 0.96084 0.96131 0.90843 0.89080 1.23755 0.93432 1.04980 0.97077 1.23868 0.95894 0.97019 0.95915 1.70397 1.04561 1.02441 1.38460 1.23887 0.96580 0.91448 1.00793 1.22607 0.94475 0.98640 0.98372 1.19934 0.94929 0.84684 0.91932 0.97160 1.21078 0.92022 0.99000 1.39939 0.94349 1.25298 0.99885 0.96428 0.95857 1.69990 1.34265 1.06548 1.44552 0.85974 0.83162 0.77208 0.77812 1.21397 1.20128 1.20708 1.67063 1.26913 1.05553 1.19146 0.81910 0.88108 0.85930 0.90910 0.88735 0.89007 0.89089 0.92740 0.94731 0.91920 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.99 18.31 20.01 0.37 -22.62 16 2 C 0.24 9.31 13.15 89.44 1.18 10.48 16 3 C -0.02 -0.54 4.86 28.48 0.14 -0.40 16 4 C 0.05 1.53 2.85 45.48 0.13 1.66 16 5 H 0.09 2.57 8.20 -2.02 -0.02 2.55 16 6 C -0.15 -3.14 6.57 32.15 0.21 -2.93 16 7 C 0.00 0.05 6.69 86.85 0.58 0.63 16 8 N -0.35 -12.25 6.25 -499.60 -3.12 -15.38 16 9 C 0.00 0.07 6.55 86.72 0.57 0.64 16 10 C -0.10 -4.67 5.68 32.17 0.18 -4.49 16 11 C 0.19 9.14 1.84 45.30 0.08 9.23 16 12 H 0.01 0.54 6.04 -2.93 -0.02 0.52 16 13 C -0.48 -26.65 7.15 25.71 0.18 -26.47 16 14 H 0.04 2.30 7.46 -2.91 -0.02 2.28 16 15 C 0.02 1.37 5.29 84.65 0.45 1.82 16 16 N -0.91 -51.78 11.80 21.44 0.25 -51.53 16 17 Si 0.93 47.32 29.54 68.60 2.03 49.34 16 18 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 21 N -0.37 -15.06 5.35 -468.80 -2.51 -17.57 16 22 H 0.16 2.59 8.14 -2.38 -0.02 2.57 16 23 H 0.10 3.07 6.26 -2.39 -0.01 3.05 16 24 H 0.12 1.58 8.13 -2.44 -0.02 1.56 16 25 H 0.07 1.52 8.11 -2.47 -0.02 1.50 16 26 H 0.09 2.05 8.17 -2.23 -0.02 2.04 16 27 H 0.09 1.84 7.72 -2.67 -0.02 1.82 16 28 H 0.09 2.90 8.18 -2.14 -0.02 2.88 16 29 H 0.05 1.71 7.79 -2.38 -0.02 1.69 16 30 H 0.03 1.77 7.93 -2.57 -0.02 1.75 16 31 H 0.06 3.08 7.27 -2.72 -0.02 3.06 16 32 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -69.34 260.92 1.82 -67.52 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: 1.10 Total: 0.06 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 3.70 Total: -9.83 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -5.01 Total: -107.10 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -69.34 1.82 -67.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075579914.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.776 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds