Wall clock time and date at job start Mon Mar 30 2020 02:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.36273 * 126.58679 * 90.02684 * 10 9 7 12 12 N 1.38501 * 125.75699 * 359.97438 * 11 10 9 13 13 N 1.31426 * 108.48263 * 179.97438 * 11 10 9 14 14 C 1.33904 * 109.22243 * 359.97438 * 13 11 10 15 15 C 1.34753 * 108.23599 * 359.78310 * 14 13 11 16 16 C 1.50681 * 124.50144 * 179.48150 * 15 14 13 17 17 C 1.53387 * 108.46460 * 344.16836 * 16 15 14 18 18 C 1.53124 * 109.41272 * 49.37640 * 17 16 15 19 19 C 1.50921 * 127.79012 * 180.11480 * 14 13 11 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 22 22 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 23 23 H 0.96992 * 120.00240 * 0.02562 * 12 11 10 24 24 H 0.97005 * 119.99376 * 180.02562 * 12 11 10 25 25 H 1.09002 * 109.83135 * 224.31346 * 16 15 14 26 26 H 1.08992 * 109.45935 * 103.80975 * 16 15 14 27 27 H 1.09001 * 109.48609 * 289.39352 * 17 16 15 28 28 H 1.09005 * 109.48076 * 169.35453 * 17 16 15 29 29 H 1.09004 * 109.46905 * 170.02279 * 18 17 16 30 30 H 1.08994 * 109.46605 * 50.04274 * 18 17 16 31 31 H 1.08998 * 109.64257 * 282.96045 * 19 14 13 32 32 H 1.08998 * 109.64404 * 43.38903 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 7 2.2029 -3.6127 -0.0182 11 6 2.7303 -4.2361 1.0727 12 7 2.4572 -3.9238 2.3941 13 7 3.5417 -5.1838 0.6594 14 6 3.5585 -5.1969 -0.6795 15 6 2.7288 -4.2312 -1.1210 16 6 2.4801 -3.9182 -2.5738 17 6 3.5868 -4.5748 -3.4086 18 6 3.7366 -6.0407 -2.9922 19 6 4.3429 -6.1141 -1.5856 20 1 -0.4850 0.8401 0.0040 21 1 0.6240 -2.5614 0.8771 22 1 0.6246 -2.5525 -0.9029 23 1 1.8415 -3.2047 2.6053 24 1 2.8819 -4.4242 3.1085 25 1 2.4955 -2.8392 -2.7276 26 1 1.5104 -4.3179 -2.8705 27 1 4.5280 -4.0512 -3.2407 28 1 3.3248 -4.5221 -4.4654 29 1 4.3913 -6.5534 -3.6970 30 1 2.7577 -6.5199 -2.9913 31 1 5.3843 -5.7941 -1.6183 32 1 4.2851 -7.1362 -1.2113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076095031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:40 Heat of formation + Delta-G solvation = 37.510633 kcal Electronic energy + Delta-G solvation = -15181.213452 eV Core-core repulsion = 12755.498015 eV Total energy + Delta-G solvation = -2425.715437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15324 -36.31444 -33.98830 -33.05635 -32.17953 -29.63314 -27.32502 -26.99108 -23.36203 -22.19507 -21.39337 -19.48270 -18.40338 -16.79728 -16.11905 -15.50077 -15.08758 -14.67270 -14.36087 -13.79866 -13.37654 -12.84913 -12.60914 -12.33867 -12.12946 -11.64261 -11.57904 -11.16888 -10.91413 -10.52423 -10.48991 -10.41693 -10.13154 -9.97800 -9.40919 -8.94508 -8.68516 -8.33104 -6.46415 -6.29434 -4.40389 3.12550 3.16280 3.23463 3.29467 3.69899 4.05675 4.23702 4.55840 5.01650 5.24212 5.27862 5.29625 5.73405 5.80379 5.98561 6.03390 6.09082 6.20341 6.31033 6.39834 6.52593 6.54748 6.69971 6.87777 6.94885 7.30788 7.60963 7.67468 7.76209 7.84406 8.22395 8.50898 8.74930 9.23820 9.28017 10.75167 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029917 B = 0.009272 C = 0.007894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.689585 B = 3019.090812 C = 3546.017673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.238 3.762 10 N -0.449 5.449 11 C 0.467 3.533 12 N -0.843 5.843 13 N -0.553 5.553 14 C -0.006 4.006 15 C -0.035 4.035 16 C -0.035 4.035 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.023 4.023 20 H 0.268 0.732 21 H 0.041 0.959 22 H 0.046 0.954 23 H 0.408 0.592 24 H 0.408 0.592 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -7.116 -3.032 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.119 3.881 10 N -0.136 5.136 11 C 0.112 3.888 12 N -0.399 5.399 13 N -0.282 5.282 14 C -0.135 4.135 15 C -0.151 4.151 16 C -0.073 4.073 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.061 4.061 20 H 0.077 0.923 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.238 0.762 24 H 0.238 0.762 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.087 -7.391 -2.657 8.854 hybrid contribution -0.293 1.808 0.084 1.834 sum 3.794 -5.583 -2.573 7.224 Atomic orbital electron populations 1.69925 1.06051 1.27665 1.49161 1.24951 0.94938 0.99498 0.94382 0.86382 0.79808 0.82266 0.78416 1.20346 1.19640 1.20862 1.21326 0.93688 0.89749 1.52865 0.91817 1.19572 0.87163 0.82165 0.99228 1.45448 1.36310 1.27806 1.04024 1.19315 0.94606 0.91963 0.82891 1.40725 1.55359 1.43097 1.00722 1.69981 1.24120 1.22780 1.11280 1.19932 1.02996 1.00621 0.89910 1.20416 1.04857 1.00267 0.89560 1.19901 0.98147 1.01231 0.88045 1.21516 0.99062 0.95759 0.98469 1.21564 1.00970 0.96683 0.96051 1.19757 0.97329 0.97249 0.91795 0.92268 0.94118 0.93583 0.76230 0.76194 0.90547 0.91829 0.91767 0.91825 0.91987 0.91952 0.91758 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.24 5.94 5.61 -5.19 -0.03 5.91 16 10 N -0.45 -10.44 2.77 -114.19 -0.32 -10.76 16 11 C 0.47 10.37 9.05 -318.98 -2.89 7.48 16 12 N -0.84 -15.37 9.07 30.29 0.27 -15.10 16 13 N -0.55 -12.34 11.28 -9.98 -0.11 -12.45 16 14 C -0.01 -0.12 6.97 -82.82 -0.58 -0.70 16 15 C -0.03 -0.75 6.75 -81.56 -0.55 -1.30 16 16 C -0.03 -0.63 5.98 -27.69 -0.17 -0.80 16 17 C -0.11 -1.59 5.92 -26.47 -0.16 -1.74 16 18 C -0.11 -1.55 5.90 -26.49 -0.16 -1.70 16 19 C -0.02 -0.37 6.30 -27.60 -0.17 -0.54 16 20 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 21 H 0.04 1.03 7.53 -51.93 -0.39 0.64 16 22 H 0.05 1.20 8.00 -51.93 -0.42 0.78 16 23 H 0.41 7.23 8.11 -40.82 -0.33 6.90 16 24 H 0.41 6.23 8.95 -40.82 -0.37 5.86 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -29.99 268.39 -9.94 -39.93 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.43 Total: 8.86 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -5.12 Total: -6.49 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.58 Total: -62.09 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.99 -9.94 -39.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076095031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.437 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds