Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99437 * 2 1 4 4 C 1.46904 * 111.00222 * 123.94857 * 2 1 3 5 5 C 1.50699 * 109.46960 * 66.05148 * 4 2 1 6 6 C 1.38328 * 119.96230 * 269.97850 * 5 4 2 7 7 C 1.38281 * 120.13505 * 180.02562 * 6 5 4 8 8 C 1.38120 * 120.06679 * 359.68445 * 7 6 5 9 9 C 1.38852 * 119.93490 * 0.58817 * 8 7 6 10 10 O 1.35752 * 120.07221 * 179.70368 * 9 8 7 11 11 C 1.34829 * 116.99954 * 354.17311 * 10 9 8 12 12 H 1.07998 * 119.99999 * 5.03596 * 11 10 9 13 13 C 1.38656 * 119.99670 * 185.03445 * 11 10 9 14 14 N 1.31550 * 120.00275 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99668 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47010 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46908 * 119.99967 * 15 13 11 18 18 H 1.48504 * 109.47373 * 240.00300 * 15 13 11 19 19 C 1.38073 * 119.96534 * 89.99651 * 5 4 2 20 20 H 1.09007 * 109.47471 * 296.04242 * 1 2 3 21 21 H 1.08998 * 109.47574 * 56.05440 * 1 2 3 22 22 H 1.09007 * 109.46537 * 176.04921 * 1 2 3 23 23 H 1.08998 * 109.46777 * 183.95511 * 3 2 1 24 24 H 1.09005 * 109.47026 * 303.94636 * 3 2 1 25 25 H 1.08999 * 109.47647 * 63.95435 * 3 2 1 26 26 H 1.09002 * 109.46748 * 306.05054 * 4 2 1 27 27 H 1.08992 * 109.46853 * 186.05167 * 4 2 1 28 28 H 1.08001 * 119.93314 * 0.02562 * 6 5 4 29 29 H 1.07993 * 119.96315 * 179.97438 * 7 6 5 30 30 H 1.08006 * 120.03715 * 180.31908 * 8 7 6 31 31 H 0.96999 * 119.99936 * 179.97438 * 14 13 11 32 32 H 1.07996 * 120.03547 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6371 -2.2203 0.9730 6 6 0.4505 -2.7029 1.4952 7 6 0.1184 -4.0370 1.3466 8 6 0.9680 -4.8905 0.6703 9 6 2.1624 -4.4104 0.1499 10 8 3.0024 -5.2481 -0.5101 11 6 2.6776 -6.5566 -0.5216 12 1 1.7431 -6.8848 -0.0909 13 6 3.5432 -7.4808 -1.0864 14 7 4.6816 -7.0811 -1.6106 15 14 3.0935 -9.2938 -1.1017 16 1 1.7702 -9.4810 -0.4543 17 1 3.0304 -9.7763 -2.5047 18 1 4.1221 -10.0653 -0.3586 19 6 2.4936 -3.0699 0.3014 20 1 -0.3634 0.4512 0.9234 21 1 -0.3634 0.5738 -0.8525 22 1 -0.3633 -1.0253 -0.0708 23 1 3.0826 1.3434 -0.0709 24 1 1.5897 1.9164 -0.8526 25 1 1.7043 1.8725 0.9233 26 1 1.5611 -0.3871 2.0628 27 1 3.0797 -0.6609 1.1757 28 1 -0.2178 -2.0363 2.0200 29 1 -0.8085 -4.4108 1.7557 30 1 0.7056 -5.9312 0.5500 31 1 5.2874 -7.7277 -2.0053 32 1 3.4202 -2.6927 -0.1054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077013899.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = -18.568372 kcal Electronic energy + Delta-G solvation = -14556.943243 eV Core-core repulsion = 12096.503287 eV Total energy + Delta-G solvation = -2460.439956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.84560 -39.03186 -37.29247 -34.28716 -32.44690 -30.76247 -28.43552 -27.78900 -27.05177 -23.61094 -22.99778 -21.92599 -19.48946 -18.74272 -16.76653 -16.56281 -16.37882 -16.22437 -15.84628 -15.55305 -15.42395 -14.70574 -14.25307 -13.74079 -13.59381 -13.15266 -13.07137 -12.90480 -12.63316 -12.63162 -12.27776 -12.16722 -12.11447 -12.03452 -11.15934 -10.80375 -9.67988 -9.24383 -8.94423 -8.45945 -6.14539 0.54233 0.75225 1.35512 1.44231 1.54241 2.18608 2.77448 3.07974 3.36307 3.47821 3.97808 4.11350 4.26499 4.35129 4.39292 4.52237 4.58245 4.63038 4.74716 4.76458 4.81140 5.04152 5.09079 5.11421 5.14283 5.31721 5.67781 5.74413 5.77248 6.04161 6.07790 6.18416 6.26233 6.98755 7.80797 8.77886 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049751 B = 0.006178 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.663143 B = 4531.099569 C = 4908.878518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.567 5.567 3 C 0.026 3.974 4 C 0.103 3.897 5 C -0.035 4.035 6 C -0.182 4.182 7 C -0.071 4.071 8 C -0.245 4.245 9 C 0.112 3.888 10 O -0.235 6.235 11 C -0.413 4.413 12 H 0.102 0.898 13 C -0.025 4.025 14 N -0.923 5.923 15 Si 1.021 2.979 16 H -0.251 1.251 17 H -0.268 1.268 18 H -0.268 1.268 19 C -0.185 4.185 20 H 0.040 0.960 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.118 0.882 31 H 0.272 0.728 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 11.186 6.219 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.291 5.291 3 C -0.121 4.121 4 C -0.024 4.024 5 C -0.035 4.035 6 C -0.201 4.201 7 C -0.089 4.089 8 C -0.265 4.265 9 C 0.062 3.938 10 O -0.142 6.142 11 C -0.489 4.489 12 H 0.119 0.881 13 C -0.222 4.222 14 N -0.561 5.561 15 Si 0.840 3.160 16 H -0.174 1.174 17 H -0.193 1.193 18 H -0.193 1.193 19 C -0.205 4.205 20 H 0.058 0.942 21 H 0.093 0.907 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.653 10.953 5.568 15.028 hybrid contribution 0.029 -0.623 0.349 0.714 sum -8.624 10.330 5.917 14.700 Atomic orbital electron populations 1.22464 0.86512 1.02399 1.01166 1.61882 1.09243 1.14793 1.43230 1.22419 1.00874 0.87441 1.01384 1.20989 1.00524 0.88523 0.92362 1.19557 0.93734 0.94848 0.95387 1.20953 0.97675 0.95643 1.05808 1.21125 0.98566 0.93343 0.95895 1.21295 0.96461 1.01370 1.07354 1.19899 0.90654 0.91473 0.91743 1.83944 1.46582 1.18753 1.64907 1.21872 1.06369 0.79850 1.40818 0.88114 1.26616 0.94634 1.05396 0.95521 1.70198 1.10811 1.36999 1.38099 0.84507 0.79116 0.73624 0.78787 1.17424 1.19338 1.19294 1.20203 1.02338 0.90885 1.07070 0.94152 0.90742 0.92116 0.91411 0.90449 0.94385 0.91887 0.90218 0.83849 0.83608 0.86433 0.91868 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.14 127.69 1.17 1.67 16 2 N -0.57 -14.87 5.01 -953.44 -4.78 -19.65 16 3 C 0.03 0.51 9.57 127.69 1.22 1.74 16 4 C 0.10 2.82 5.12 85.56 0.44 3.26 16 5 C -0.03 -1.21 4.88 -19.88 -0.10 -1.31 16 6 C -0.18 -5.71 7.96 22.30 0.18 -5.54 16 7 C -0.07 -2.47 10.04 22.25 0.22 -2.25 16 8 C -0.25 -10.97 9.17 22.39 0.21 -10.76 16 9 C 0.11 5.81 6.65 22.58 0.15 5.96 16 10 O -0.23 -14.63 9.76 -22.74 -0.22 -14.85 16 11 C -0.41 -24.65 9.49 67.92 0.64 -24.01 16 12 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 13 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 14 N -0.92 -57.84 13.67 21.61 0.30 -57.54 16 15 Si 1.02 43.60 29.55 68.60 2.03 45.62 16 16 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 C -0.19 -8.34 9.65 22.39 0.22 -8.13 16 20 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 21 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 22 H 0.06 1.58 6.17 -2.38 -0.01 1.56 16 23 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 24 H 0.08 1.34 8.12 -2.38 -0.02 1.32 16 25 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 1.43 8.06 -2.39 -0.02 1.41 16 27 H 0.08 2.17 8.01 -2.39 -0.02 2.15 16 28 H 0.14 3.41 8.03 -2.91 -0.02 3.39 16 29 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -71.50 272.64 3.23 -68.27 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.10 Total: 18.48 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 4.81 Total: -40.32 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -4.48 Total: -77.19 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.22 Total: -14.85 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -71.50 3.23 -68.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077013899.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.698 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds