Wall clock time and date at job start Mon Mar 30 2020 02:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47196 * 2 1 4 4 C 1.35561 * 119.47424 * 89.99756 * 3 2 1 5 5 C 1.50697 * 118.96800 * 359.97438 * 4 3 2 6 6 C 1.35926 * 122.05915 * 179.97438 * 4 3 2 7 7 C 1.38998 * 120.84146 * 0.02562 * 6 4 3 8 8 C 1.50699 * 120.58121 * 179.97438 * 7 6 4 9 9 C 1.40613 * 118.83146 * 0.24747 * 7 6 4 10 10 C 1.40506 * 120.92721 * 179.75034 * 9 7 6 11 11 H 1.07995 * 120.00047 * 36.10236 * 10 9 7 12 12 C 1.40042 * 120.00068 * 216.10730 * 10 9 7 13 13 N 1.30849 * 119.99956 * 20.10106 * 12 10 9 14 14 Si 1.86801 * 119.99952 * 200.10193 * 12 10 9 15 15 H 1.48501 * 109.47033 * 90.00255 * 14 12 10 16 16 H 1.48496 * 109.46766 * 209.99751 * 14 12 10 17 17 H 1.48497 * 109.47077 * 329.99749 * 14 12 10 18 18 C 1.34787 * 119.47102 * 269.97436 * 3 2 1 19 19 O 1.21792 * 120.46807 * 0.02799 * 18 3 2 20 20 H 1.09002 * 109.47152 * 300.00566 * 1 2 3 21 21 H 1.08998 * 109.46748 * 60.00112 * 1 2 3 22 22 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47152 * 239.99434 * 2 1 3 24 24 H 1.09006 * 109.46968 * 120.00074 * 2 1 3 25 25 H 1.09002 * 109.46733 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.47017 * 300.01918 * 5 4 3 27 27 H 1.09001 * 109.47317 * 60.02424 * 5 4 3 28 28 H 1.08003 * 119.58050 * 180.02562 * 6 4 3 29 29 H 1.08995 * 109.47360 * 359.97438 * 8 7 6 30 30 H 1.08996 * 109.46825 * 239.99910 * 8 7 6 31 31 H 1.09004 * 109.46620 * 120.00059 * 8 7 6 32 32 H 0.97004 * 119.99842 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2407 2.0101 1.1802 5 6 1.9771 1.2667 2.4643 6 6 2.6938 3.2901 1.2415 7 6 2.9491 4.0120 0.0814 8 6 3.4508 5.4310 0.1562 9 6 2.7254 3.3968 -1.1631 10 6 2.9639 4.0874 -2.3633 11 1 3.7920 4.7770 -2.4341 12 6 2.1276 3.8817 -3.4676 13 7 0.9308 3.3808 -3.2976 14 14 2.7208 4.3222 -5.1833 15 1 3.3967 3.1474 -5.7901 16 1 1.5602 4.7138 -6.0228 17 1 3.6768 5.4555 -5.1007 18 6 2.2399 2.0062 -1.1735 19 8 2.0365 1.4310 -2.2276 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 2.2053 1.9132 3.3117 26 1 0.9287 0.9714 2.5046 27 1 2.6068 0.3779 2.5054 28 1 2.8575 3.7522 2.2038 29 1 3.5543 5.7253 1.2006 30 1 2.7412 6.0938 -0.3390 31 1 4.4194 5.5004 -0.3390 32 1 0.3517 3.2379 -4.0626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082664857.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:28 Heat of formation + Delta-G solvation = -22.819729 kcal Electronic energy + Delta-G solvation = -15507.732289 eV Core-core repulsion = 13047.107980 eV Total energy + Delta-G solvation = -2460.624309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59314 -35.68774 -34.89256 -32.84867 -30.98442 -29.82791 -27.84655 -26.48434 -23.84296 -22.53830 -21.06288 -19.22695 -17.70224 -16.16052 -15.35373 -14.88467 -14.32757 -14.17425 -13.34993 -13.06165 -12.59554 -12.46686 -12.23872 -12.08610 -11.84063 -11.74432 -11.39605 -11.35267 -11.21685 -10.78257 -10.60366 -10.47809 -10.32834 -9.80866 -9.77162 -9.02098 -8.29730 -7.95099 -6.86051 -6.34462 -4.11724 2.50085 3.11891 3.16852 3.20350 3.57784 3.98847 4.09729 4.69552 5.41666 5.47308 5.68983 5.78697 5.83704 5.87692 6.06409 6.18766 6.23953 6.32433 6.46201 6.49737 6.71403 6.76567 6.86768 6.87648 7.04179 7.15284 7.56699 7.64724 7.99375 8.21742 8.32988 8.64480 8.88054 8.90729 9.78779 10.22946 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029991 B = 0.011908 C = 0.009067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.399936 B = 2350.852671 C = 3087.313605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.496 5.496 4 C -0.034 4.034 5 C -0.087 4.087 6 C -0.112 4.112 7 C -0.262 4.262 8 C -0.058 4.058 9 C 0.048 3.952 10 C -0.421 4.421 11 H 0.088 0.912 12 C 0.083 3.917 13 N -0.742 5.742 14 Si 0.909 3.091 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.262 1.262 18 C 0.515 3.485 19 O -0.543 6.543 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.244 -2.475 5.757 6.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.215 5.215 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.135 4.135 7 C -0.266 4.266 8 C -0.115 4.115 9 C 0.041 3.959 10 C -0.449 4.449 11 H 0.106 0.894 12 C -0.142 4.142 13 N -0.363 5.363 14 Si 0.733 3.267 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.186 1.186 18 C 0.312 3.688 19 O -0.423 6.423 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.130 -2.919 5.009 5.800 hybrid contribution 0.109 0.064 -0.679 0.690 sum -0.022 -2.856 4.331 5.188 Atomic orbital electron populations 1.22072 0.95957 1.01128 1.02777 1.21443 0.94700 0.83903 1.02379 1.44656 1.57846 1.12673 1.06283 1.19105 1.13670 0.95064 0.85665 1.20557 1.00404 0.99178 0.94348 1.19585 1.04273 0.92451 0.97170 1.19405 1.19251 0.96297 0.91647 1.20041 0.98940 0.94300 0.98216 1.19356 0.93614 0.89565 0.93374 1.19192 1.10569 1.20454 0.94702 0.89380 1.25872 0.93971 0.93087 1.01241 1.69725 1.05925 1.26871 1.33797 0.86304 0.79362 0.79606 0.81397 1.19222 1.20378 1.18593 1.19276 0.79631 0.88164 0.81708 1.90662 1.53981 1.67798 1.29868 0.92754 0.91706 0.92448 0.90188 0.91090 0.91773 0.92972 0.93180 0.88123 0.94950 0.93696 0.94412 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.20 37.16 0.38 -2.43 16 2 C 0.10 1.88 5.56 -4.04 -0.02 1.86 16 3 N -0.50 -11.48 2.58 -112.74 -0.29 -11.78 16 4 C -0.03 -0.72 6.66 -81.78 -0.54 -1.27 16 5 C -0.09 -1.38 8.67 36.00 0.31 -1.07 16 6 C -0.11 -2.45 9.18 -40.13 -0.37 -2.82 16 7 C -0.26 -6.43 5.98 -103.45 -0.62 -7.05 16 8 C -0.06 -1.24 9.13 36.01 0.33 -0.91 16 9 C 0.05 1.31 5.53 -104.46 -0.58 0.73 16 10 C -0.42 -11.53 8.24 -38.05 -0.31 -11.84 16 11 H 0.09 2.28 7.44 -52.49 -0.39 1.89 16 12 C 0.08 2.20 4.59 -17.29 -0.08 2.12 16 13 N -0.74 -20.72 11.18 55.55 0.62 -20.09 16 14 Si 0.91 19.91 29.61 -169.99 -5.03 14.88 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 18 C 0.51 14.13 7.13 -12.57 -0.09 14.04 16 19 O -0.54 -16.08 13.74 5.11 0.07 -16.01 16 20 H 0.05 0.90 7.10 -51.93 -0.37 0.53 16 21 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.08 1.61 7.40 -51.93 -0.38 1.23 16 24 H 0.07 1.12 6.30 -51.93 -0.33 0.79 16 25 H 0.06 0.89 7.76 -51.93 -0.40 0.49 16 26 H 0.05 0.77 6.98 -51.93 -0.36 0.41 16 27 H 0.05 0.72 7.31 -51.93 -0.38 0.34 16 28 H 0.10 1.91 7.74 -52.48 -0.41 1.51 16 29 H 0.03 0.59 7.91 -51.93 -0.41 0.18 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.77 7.92 -51.93 -0.41 0.36 16 32 H 0.28 7.27 8.30 -40.82 -0.34 6.93 16 LS Contribution 265.91 15.07 4.01 4.01 Total: -1.00 -30.80 265.91 -6.47 -37.26 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.25 Total: 0.37 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.60 Total: -8.64 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.33 Total: -31.87 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.07 Total: -16.01 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.80 -6.47 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082664857.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.444 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds