Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47196 * 2 1 4 4 C 1.35561 * 119.47424 * 89.99756 * 3 2 1 5 5 C 1.50697 * 118.96800 * 359.97438 * 4 3 2 6 6 C 1.35926 * 122.05915 * 179.97438 * 4 3 2 7 7 C 1.38998 * 120.84146 * 0.02562 * 6 4 3 8 8 C 1.50699 * 120.58121 * 179.97438 * 7 6 4 9 9 C 1.40613 * 118.83146 * 0.24747 * 7 6 4 10 10 C 1.40506 * 120.92721 * 179.75034 * 9 7 6 11 11 H 1.07995 * 120.00047 * 36.10236 * 10 9 7 12 12 C 1.40042 * 120.00068 * 216.10730 * 10 9 7 13 13 N 1.30849 * 119.99956 * 20.10106 * 12 10 9 14 14 Si 1.86801 * 119.99952 * 200.10193 * 12 10 9 15 15 H 1.48501 * 109.47033 * 90.00255 * 14 12 10 16 16 H 1.48496 * 109.46766 * 209.99751 * 14 12 10 17 17 H 1.48497 * 109.47077 * 329.99749 * 14 12 10 18 18 C 1.34787 * 119.47102 * 269.97436 * 3 2 1 19 19 O 1.21792 * 120.46807 * 0.02799 * 18 3 2 20 20 H 1.09002 * 109.47152 * 300.00566 * 1 2 3 21 21 H 1.08998 * 109.46748 * 60.00112 * 1 2 3 22 22 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47152 * 239.99434 * 2 1 3 24 24 H 1.09006 * 109.46968 * 120.00074 * 2 1 3 25 25 H 1.09002 * 109.46733 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.47017 * 300.01918 * 5 4 3 27 27 H 1.09001 * 109.47317 * 60.02424 * 5 4 3 28 28 H 1.08003 * 119.58050 * 180.02562 * 6 4 3 29 29 H 1.08995 * 109.47360 * 359.97438 * 8 7 6 30 30 H 1.08996 * 109.46825 * 239.99910 * 8 7 6 31 31 H 1.09004 * 109.46620 * 120.00059 * 8 7 6 32 32 H 0.97004 * 119.99842 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2407 2.0101 1.1802 5 6 1.9771 1.2667 2.4643 6 6 2.6938 3.2901 1.2415 7 6 2.9491 4.0120 0.0814 8 6 3.4508 5.4310 0.1562 9 6 2.7254 3.3968 -1.1631 10 6 2.9639 4.0874 -2.3633 11 1 3.7920 4.7770 -2.4341 12 6 2.1276 3.8817 -3.4676 13 7 0.9308 3.3808 -3.2976 14 14 2.7208 4.3222 -5.1833 15 1 3.3967 3.1474 -5.7901 16 1 1.5602 4.7138 -6.0228 17 1 3.6768 5.4555 -5.1007 18 6 2.2399 2.0062 -1.1735 19 8 2.0365 1.4310 -2.2276 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 2.2053 1.9132 3.3117 26 1 0.9287 0.9714 2.5046 27 1 2.6068 0.3779 2.5054 28 1 2.8575 3.7522 2.2038 29 1 3.5543 5.7253 1.2006 30 1 2.7412 6.0938 -0.3390 31 1 4.4194 5.5004 -0.3390 32 1 0.3517 3.2379 -4.0626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082664857.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = -41.735309 kcal Electronic energy + Delta-G solvation = -15508.552530 eV Core-core repulsion = 13047.107980 eV Total energy + Delta-G solvation = -2461.444550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.45617 -37.61155 -36.71461 -34.68812 -32.61942 -31.50469 -29.64168 -28.13834 -25.64933 -24.14848 -22.91819 -21.00043 -19.58085 -17.97472 -17.15800 -16.68440 -16.11201 -16.05075 -14.91121 -14.83892 -14.22058 -14.02533 -13.93855 -13.66086 -13.38757 -13.36313 -13.13238 -12.98492 -12.82244 -12.59620 -12.34248 -12.06196 -12.00334 -11.57549 -11.51468 -10.90790 -10.25074 -9.83488 -8.74308 -8.23818 -6.06820 0.64634 1.32952 1.43839 1.47240 1.65712 2.20261 2.32915 2.80730 3.56033 3.93956 4.16260 4.28278 4.40638 4.44326 4.57210 4.73679 4.82811 4.88738 4.94193 5.06726 5.08490 5.12971 5.14059 5.26702 5.30964 5.34382 5.77606 5.79887 6.08623 6.35319 6.46974 6.78001 6.96689 7.01572 7.82870 8.39061 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029991 B = 0.011908 C = 0.009067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.399936 B = 2350.852671 C = 3087.313605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.090 3.910 3 N -0.498 5.498 4 C -0.003 4.003 5 C -0.089 4.089 6 C -0.151 4.151 7 C -0.239 4.239 8 C -0.058 4.058 9 C -0.011 4.011 10 C -0.468 4.468 11 H 0.084 0.916 12 C 0.039 3.961 13 N -0.796 5.796 14 Si 0.973 3.027 15 H -0.277 1.277 16 H -0.267 1.267 17 H -0.247 1.247 18 C 0.490 3.510 19 O -0.583 6.583 20 H 0.067 0.933 21 H 0.019 0.981 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.141 0.859 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -3.140 8.987 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.032 4.032 3 N -0.214 5.214 4 C -0.105 4.105 5 C -0.146 4.146 6 C -0.173 4.173 7 C -0.244 4.244 8 C -0.115 4.115 9 C -0.017 4.017 10 C -0.498 4.498 11 H 0.102 0.898 12 C -0.179 4.179 13 N -0.420 5.420 14 Si 0.794 3.206 15 H -0.203 1.203 16 H -0.192 1.192 17 H -0.170 1.170 18 C 0.289 3.711 19 O -0.467 6.467 20 H 0.086 0.914 21 H 0.039 0.961 22 H 0.115 0.885 23 H 0.079 0.921 24 H 0.135 0.865 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.177 -3.585 8.272 9.017 hybrid contribution 0.042 0.135 -1.232 1.240 sum 0.219 -3.450 7.041 7.844 Atomic orbital electron populations 1.21996 0.94523 1.03274 1.01159 1.21805 0.95855 0.81796 1.03708 1.44969 1.56138 1.14229 1.06059 1.20251 1.08116 0.95176 0.86983 1.20750 1.02146 1.00081 0.91580 1.20076 1.06012 0.93267 0.97978 1.20133 1.14845 0.97599 0.91775 1.20097 0.98645 0.92315 1.00440 1.19733 0.96844 0.90326 0.94807 1.19257 1.11717 1.22593 0.96193 0.89764 1.26649 0.93689 0.92787 1.04797 1.69803 1.07227 1.30628 1.34305 0.85355 0.79217 0.79180 0.76831 1.20311 1.19208 1.16989 1.19502 0.80493 0.88576 0.82511 1.90604 1.56122 1.68550 1.31438 0.91397 0.96140 0.88488 0.92082 0.86455 0.88884 0.91055 0.90623 0.84123 0.91359 0.94531 0.94065 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 10.20 71.98 0.73 -4.22 16 2 C 0.09 3.22 5.56 86.38 0.48 3.70 16 3 N -0.50 -22.45 2.58 -628.78 -1.62 -24.07 16 4 C 0.00 -0.11 6.66 41.44 0.28 0.17 16 5 C -0.09 -2.21 8.67 71.24 0.62 -1.60 16 6 C -0.15 -6.13 9.18 21.92 0.20 -5.93 16 7 C -0.24 -11.57 5.98 -19.10 -0.11 -11.68 16 8 C -0.06 -2.40 9.13 71.24 0.65 -1.75 16 9 C -0.01 -0.63 5.53 -19.76 -0.11 -0.74 16 10 C -0.47 -27.06 8.24 23.26 0.19 -26.86 16 11 H 0.08 4.63 7.44 -2.91 -0.02 4.61 16 12 C 0.04 2.20 4.59 85.28 0.39 2.59 16 13 N -0.80 -47.49 11.18 21.85 0.24 -47.24 16 14 Si 0.97 43.22 29.61 68.60 2.03 45.25 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 17 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 18 C 0.49 27.75 7.13 86.62 0.62 28.36 16 19 O -0.58 -36.52 13.74 -4.64 -0.06 -36.58 16 20 H 0.07 2.01 7.10 -2.39 -0.02 1.99 16 21 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.06 2.44 7.40 -2.39 -0.02 2.42 16 24 H 0.12 3.11 6.30 -2.38 -0.02 3.10 16 25 H 0.09 1.90 7.76 -2.39 -0.02 1.88 16 26 H 0.07 1.62 6.98 -2.39 -0.02 1.61 16 27 H 0.08 1.62 7.31 -2.39 -0.02 1.61 16 28 H 0.14 4.57 7.74 -2.91 -0.02 4.55 16 29 H 0.07 2.28 7.91 -2.39 -0.02 2.26 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.66 7.92 -2.38 -0.02 1.65 16 32 H 0.28 15.53 8.30 -92.71 -0.77 14.76 16 Total: -1.00 -72.86 265.91 5.63 -67.22 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.11 Total: 13.40 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 3.94 Total: -17.97 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.38 Total: -71.32 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.06 Total: -36.58 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -72.86 5.63 -67.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082664857.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.488 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds