Wall clock time and date at job start Mon Mar 30 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31151 * 125.97142 * 2 1 4 4 N 1.40372 * 108.28933 * 180.13712 * 3 2 1 5 5 C 1.46506 * 126.11305 * 179.73496 * 4 3 2 6 6 C 1.50695 * 109.46878 * 269.69241 * 5 4 3 7 7 H 1.08004 * 120.00546 * 0.27446 * 6 5 4 8 8 C 1.37885 * 119.99721 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00035 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99853 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47228 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46793 * 120.00131 * 10 8 6 13 13 H 1.48500 * 109.47000 * 240.00224 * 10 8 6 14 14 C 1.34044 * 107.77909 * 359.47177 * 4 3 2 15 15 C 1.35967 * 107.91406 * 0.39090 * 14 4 3 16 16 C 1.50805 * 123.41206 * 179.74588 * 15 14 4 17 17 N 1.47293 * 108.24990 * 343.66955 * 16 15 14 18 18 C 1.46935 * 111.48287 * 51.33960 * 17 16 15 19 19 C 1.50877 * 128.92836 * 180.53198 * 14 4 3 20 20 H 1.08995 * 109.47150 * 270.35643 * 1 2 3 21 21 H 1.08997 * 109.46481 * 30.36117 * 1 2 3 22 22 H 1.09000 * 109.46835 * 150.35857 * 1 2 3 23 23 H 1.08992 * 109.47424 * 149.69138 * 5 4 3 24 24 H 1.08997 * 109.46711 * 29.68738 * 5 4 3 25 25 H 0.97000 * 119.99706 * 179.97438 * 9 8 6 26 26 H 1.09003 * 109.70654 * 103.35590 * 16 15 14 27 27 H 1.09002 * 109.70774 * 223.97522 * 16 15 14 28 28 H 1.00904 * 110.99749 * 287.03708 * 17 16 15 29 29 H 1.09007 * 109.44140 * 48.47270 * 18 17 16 30 30 H 1.08993 * 109.44371 * 168.39944 * 18 17 16 31 31 H 1.09005 * 109.78742 * 283.70416 * 19 14 4 32 32 H 1.09007 * 109.79154 * 44.53662 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2774 1.0614 0.0000 4 7 3.6148 0.6351 -0.0032 5 6 4.7970 1.5004 -0.0097 6 6 5.2020 1.7867 -1.4327 7 1 4.6329 1.3698 -2.2506 8 6 6.2955 2.5860 -1.6907 9 7 6.9852 3.0981 -0.6950 10 14 6.7980 2.9403 -3.4547 11 1 5.8662 2.2508 -4.3828 12 1 6.7468 4.4041 -3.6994 13 1 8.1802 2.4481 -3.6839 14 6 3.6171 -0.7053 0.0067 15 6 2.3241 -1.1258 0.0071 16 6 1.9236 -2.5797 0.0114 17 7 3.0956 -3.3821 -0.3786 18 6 4.2754 -3.0381 0.4269 19 6 4.7924 -1.6513 0.0190 20 1 -0.3633 0.0064 1.0276 21 1 -0.3632 0.8867 -0.5194 22 1 -0.3633 -0.8932 -0.5083 23 1 5.6159 1.0008 0.5076 24 1 4.5644 2.4369 0.4972 25 1 7.7547 3.6601 -0.8765 26 1 1.5968 -2.8680 1.0105 27 1 1.1146 -2.7402 -0.7012 28 1 3.2894 -3.2839 -1.3640 29 1 4.0037 -3.0279 1.4825 30 1 5.0569 -3.7794 0.2606 31 1 5.2368 -1.7007 -0.9751 32 1 5.5351 -1.3079 0.7392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082809333.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:24 Heat of formation + Delta-G solvation = 39.395501 kcal Electronic energy + Delta-G solvation = -15079.976044 eV Core-core repulsion = 12654.342341 eV Total energy + Delta-G solvation = -2425.633703 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.40308 -37.96434 -36.01713 -34.39089 -31.59640 -30.70718 -30.52401 -27.77544 -25.34862 -24.27010 -23.43716 -20.51966 -20.08350 -18.91545 -17.58153 -16.63306 -16.43781 -15.86401 -15.55312 -14.83418 -14.59330 -14.55448 -14.31549 -13.82462 -13.69994 -13.38749 -13.29404 -13.01455 -12.76209 -12.71849 -12.40837 -12.29603 -11.81261 -11.74752 -11.37793 -10.82110 -9.96171 -9.49926 -9.06380 -8.41514 -6.60591 1.07794 1.31186 1.32772 1.45509 1.83240 1.86139 2.27892 2.87774 3.38985 3.67593 3.89943 4.02712 4.23559 4.31358 4.44378 4.58028 4.66807 4.74363 4.81235 4.85652 4.90661 4.92390 5.02545 5.08685 5.25883 5.41759 5.46302 5.71242 5.95218 6.04869 6.23100 6.46524 6.53845 7.01313 7.11263 8.65146 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.008604 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.421361 B = 3253.435769 C = 3688.195361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 N -0.359 5.359 4 N -0.347 5.347 5 C 0.274 3.726 6 C -0.554 4.554 7 H 0.047 0.953 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.976 3.024 11 H -0.273 1.273 12 H -0.273 1.273 13 H -0.264 1.264 14 C 0.068 3.932 15 C -0.306 4.306 16 C 0.151 3.849 17 N -0.679 5.679 18 C 0.076 3.924 19 C -0.089 4.089 20 H 0.088 0.912 21 H 0.064 0.936 22 H 0.101 0.899 23 H 0.043 0.957 24 H 0.018 0.982 25 H 0.275 0.725 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.344 0.656 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 -12.236 0.658 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 N -0.183 5.183 4 N -0.125 5.125 5 C 0.155 3.845 6 C -0.592 4.592 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.556 5.556 10 Si 0.799 3.201 11 H -0.198 1.198 12 H -0.198 1.198 13 H -0.188 1.188 14 C -0.064 4.064 15 C -0.319 4.319 16 C 0.020 3.980 17 N -0.305 5.305 18 C -0.054 4.054 19 C -0.130 4.130 20 H 0.106 0.894 21 H 0.083 0.917 22 H 0.120 0.880 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.162 0.838 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.910 -11.284 1.120 13.279 hybrid contribution 0.934 1.202 -0.985 1.813 sum -5.976 -10.083 0.135 11.721 Atomic orbital electron populations 1.20224 0.84011 1.03893 1.03745 1.22715 0.98492 0.90079 0.99418 1.77424 0.87430 1.24978 1.28484 1.48820 1.05615 1.05131 1.52941 1.19148 0.78803 0.88719 0.97860 1.21400 1.13482 1.32917 0.91443 0.93515 1.25814 0.95304 0.94208 1.02688 1.70014 1.19307 1.33015 1.33265 0.85243 0.78495 0.78332 0.78016 1.19791 1.19785 1.18831 1.21514 0.98594 0.84980 1.01278 1.20998 0.90879 0.99202 1.20865 1.20451 0.93143 0.82247 1.02131 1.60833 1.04955 1.55415 1.09328 1.22079 0.93248 0.91644 0.98448 1.21208 0.93477 0.95187 1.03084 0.89367 0.91721 0.88033 0.93946 0.96405 0.91584 0.89716 0.88688 0.83830 0.90562 0.87339 0.90231 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.33 71.24 0.74 -0.85 16 2 C 0.06 2.19 7.21 42.87 0.31 2.50 16 3 N -0.36 -17.52 12.60 -47.70 -0.60 -18.12 16 4 N -0.35 -17.38 3.58 -338.36 -1.21 -18.59 16 5 C 0.27 15.20 6.06 85.63 0.52 15.72 16 6 C -0.55 -32.16 9.39 25.60 0.24 -31.92 16 7 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 8 C 0.02 1.17 5.46 84.66 0.46 1.63 16 9 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16 10 Si 0.98 43.74 29.54 68.60 2.03 45.76 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 14 C 0.07 2.83 6.79 41.75 0.28 3.11 16 15 C -0.31 -10.94 5.99 -20.15 -0.12 -11.06 16 16 C 0.15 3.82 6.78 85.52 0.58 4.40 16 17 N -0.68 -16.27 6.87 -515.76 -3.54 -19.82 16 18 C 0.08 1.86 6.54 86.47 0.57 2.43 16 19 C -0.09 -2.95 6.06 30.08 0.18 -2.77 16 20 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 21 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.10 2.00 8.01 -2.39 -0.02 1.98 16 23 H 0.04 2.35 7.70 -2.39 -0.02 2.33 16 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 2.02 8.04 -2.39 -0.02 2.01 16 28 H 0.34 8.15 8.78 -89.69 -0.79 7.36 16 29 H 0.08 1.84 8.07 -2.38 -0.02 1.82 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 32 H 0.08 2.58 7.88 -2.38 -0.02 2.56 16 Total: -1.00 -68.22 271.27 1.04 -67.17 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.33 Total: 13.12 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 3.76 Total: -16.79 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -5.07 Total: -109.27 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.22 1.04 -67.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082809333.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.570 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds