Wall clock time and date at job start Mon Mar 30 2020 03:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31167 * 125.85225 * 2 1 4 4 N 1.40319 * 108.32434 * 179.97438 * 3 2 1 5 5 C 1.37393 * 126.18192 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00596 * 186.70523 * 5 4 3 7 7 C 1.38989 * 119.99799 * 6.70064 * 5 4 3 8 8 N 1.31291 * 120.00128 * 181.92476 * 7 5 4 9 9 Si 1.86798 * 120.00103 * 1.93225 * 7 5 4 10 10 H 1.48495 * 109.47359 * 179.97438 * 9 7 5 11 11 H 1.48509 * 109.47172 * 299.99428 * 9 7 5 12 12 H 1.48502 * 109.47502 * 59.99327 * 9 7 5 13 13 C 1.35634 * 107.64030 * 0.33338 * 4 3 2 14 14 C 1.35666 * 107.71862 * 359.47877 * 13 4 3 15 15 C 1.50844 * 124.08319 * 180.30583 * 14 13 4 16 16 H 1.09004 * 109.68514 * 257.12252 * 15 14 13 17 17 N 1.46906 * 109.68265 * 136.60596 * 15 14 13 18 18 C 1.53361 * 108.38327 * 16.84742 * 15 14 13 19 19 C 1.53108 * 109.51613 * 310.04458 * 18 15 14 20 20 C 1.50797 * 128.09674 * 180.19785 * 13 4 3 21 21 H 1.09004 * 109.47254 * 90.02697 * 1 2 3 22 22 H 1.09001 * 109.47321 * 210.02545 * 1 2 3 23 23 H 1.08991 * 109.47640 * 330.03062 * 1 2 3 24 24 H 0.96998 * 119.99507 * 354.76250 * 8 7 5 25 25 H 1.00901 * 111.00050 * 179.97438 * 17 15 14 26 26 H 1.00900 * 111.00097 * 303.95379 * 17 15 14 27 27 H 1.09007 * 109.46305 * 70.05019 * 18 15 14 28 28 H 1.08993 * 109.46677 * 190.03695 * 18 15 14 29 29 H 1.09000 * 109.46854 * 190.25625 * 19 18 15 30 30 H 1.09004 * 109.46832 * 310.23931 * 19 18 15 31 31 H 1.08994 * 109.90452 * 76.37896 * 20 13 4 32 32 H 1.09000 * 109.52551 * 315.77351 * 20 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0631 0.0000 4 7 3.6133 0.6405 0.0006 5 6 4.7207 1.4537 0.0013 6 1 5.7059 1.0247 -0.1075 7 6 4.5732 2.8286 0.1419 8 7 5.6281 3.6093 0.1047 9 14 2.8740 3.5657 0.3840 10 1 2.9874 5.0412 0.5076 11 1 2.0182 3.2306 -0.7825 12 1 2.2653 3.0113 1.6199 13 6 3.6160 -0.7158 -0.0066 14 6 2.3245 -1.1313 0.0003 15 6 1.9024 -2.5794 0.0022 16 1 1.5747 -2.8678 -0.9966 17 7 0.8041 -2.7734 0.9584 18 6 3.1065 -3.4336 0.4174 19 6 4.3259 -3.0404 -0.4208 20 6 4.8045 -1.6439 -0.0049 21 1 -0.3634 -0.0005 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5133 24 1 6.5162 3.2223 0.0555 25 1 0.5054 -3.7370 0.9754 26 1 1.0678 -2.4598 1.8805 27 1 3.3228 -3.2679 1.4729 28 1 2.8782 -4.4868 0.2545 29 1 5.1265 -3.7621 -0.2583 30 1 4.0537 -3.0317 -1.4763 31 1 5.2400 -1.6873 0.9934 32 1 5.5487 -1.2841 -0.7154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082826035.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:29 Heat of formation + Delta-G solvation = 48.233306 kcal Electronic energy + Delta-G solvation = -15502.898795 eV Core-core repulsion = 13077.648328 eV Total energy + Delta-G solvation = -2425.250467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35360 -36.56905 -34.02110 -33.10453 -31.20650 -28.60645 -28.00779 -26.95835 -23.85232 -21.98996 -21.04153 -19.60627 -18.00945 -17.64246 -15.83099 -15.31625 -14.47115 -13.83836 -13.74410 -13.45806 -13.31205 -13.14264 -12.67152 -12.25869 -12.11316 -11.79424 -11.48973 -11.37757 -10.74872 -10.64152 -10.44549 -10.37904 -10.22009 -9.82036 -9.37665 -8.46390 -8.15625 -8.03220 -7.31885 -7.23778 -4.43084 3.05457 3.56298 3.72007 3.79652 3.95601 4.22190 4.39133 4.96987 4.99218 5.20071 5.21923 5.46565 5.76142 5.82390 5.93589 6.00792 6.06592 6.12121 6.30181 6.36070 6.41461 6.47643 6.56745 6.66463 6.82227 6.95427 7.25100 7.46348 7.63079 7.81622 7.86129 8.14575 8.44361 9.07099 9.31869 10.19014 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032923 B = 0.011891 C = 0.009024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.273033 B = 2354.081327 C = 3102.116859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.049 3.951 3 N -0.369 5.369 4 N -0.152 5.152 5 C -0.381 4.381 6 H 0.111 0.889 7 C 0.037 3.963 8 N -0.838 5.838 9 Si 1.125 2.875 10 H -0.317 1.317 11 H -0.273 1.273 12 H -0.286 1.286 13 C -0.004 4.004 14 C -0.268 4.268 15 C 0.186 3.814 16 H 0.069 0.931 17 N -0.838 5.838 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.034 4.034 21 H 0.053 0.947 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.278 0.722 25 H 0.328 0.672 26 H 0.339 0.661 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -11.857 0.847 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 N -0.203 5.203 4 N 0.085 4.915 5 C -0.513 4.513 6 H 0.129 0.871 7 C -0.176 4.176 8 N -0.466 5.466 9 Si 0.956 3.044 10 H -0.248 1.248 11 H -0.200 1.200 12 H -0.214 1.214 13 C -0.139 4.139 14 C -0.282 4.282 15 C 0.074 3.926 16 H 0.087 0.913 17 N -0.365 5.365 18 C -0.186 4.186 19 C -0.142 4.142 20 C -0.073 4.073 21 H 0.071 0.929 22 H 0.110 0.890 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.140 0.860 26 H 0.152 0.848 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.717 -8.586 0.518 10.328 hybrid contribution 1.995 -2.929 0.284 3.555 sum -3.722 -11.514 0.802 12.127 Atomic orbital electron populations 1.20110 0.88459 1.02602 1.01171 1.21383 0.95491 0.89904 1.03450 1.76251 0.86845 1.22197 1.34987 1.44718 1.04242 1.03209 1.39351 1.21117 0.84715 0.90903 1.54558 0.87147 1.26958 1.07477 0.92216 0.90992 1.70907 0.99822 1.37681 1.38154 0.82491 0.71089 0.71377 0.79393 1.24780 1.19967 1.21362 1.20364 0.95640 0.84554 1.13297 1.18812 0.91062 0.93643 1.24691 1.19494 0.87291 0.90971 0.94875 0.91281 1.58896 1.40103 1.24988 1.12507 1.22410 0.97222 0.98777 1.00186 1.21413 0.97022 0.95718 1.00070 1.19901 0.94137 0.92287 1.00930 0.92866 0.89006 0.93201 0.91132 0.86014 0.84835 0.92293 0.92834 0.92328 0.91866 0.91831 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.22 10.28 36.01 0.37 -0.85 16 2 C 0.05 1.15 7.17 -82.38 -0.59 0.56 16 3 N -0.37 -9.88 7.20 33.66 0.24 -9.63 16 4 N -0.15 -4.09 3.66 -7.85 -0.03 -4.12 16 5 C -0.38 -10.65 10.41 -14.78 -0.15 -10.81 16 6 H 0.11 3.02 7.87 -52.48 -0.41 2.61 16 7 C 0.04 1.06 5.50 -17.50 -0.10 0.97 16 8 N -0.84 -23.84 13.68 55.49 0.76 -23.08 16 9 Si 1.12 29.36 25.74 -169.99 -4.38 24.98 16 10 H -0.32 -8.06 7.11 56.52 0.40 -7.66 16 11 H -0.27 -7.19 6.76 56.52 0.38 -6.81 16 12 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 13 C 0.00 -0.10 6.72 -81.78 -0.55 -0.65 16 14 C -0.27 -5.73 5.53 -104.97 -0.58 -6.31 16 15 C 0.19 3.02 3.51 -68.60 -0.24 2.78 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 17 N -0.84 -11.58 7.23 -5.43 -0.04 -11.62 16 18 C -0.15 -2.07 5.49 -26.49 -0.15 -2.21 16 19 C -0.10 -1.54 5.90 -26.48 -0.16 -1.70 16 20 C -0.03 -0.63 5.88 -27.64 -0.16 -0.79 16 21 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.09 1.55 6.16 -51.93 -0.32 1.23 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.28 7.53 8.72 -40.82 -0.36 7.18 16 25 H 0.33 3.58 9.05 -39.29 -0.36 3.23 16 26 H 0.34 4.79 8.98 -39.29 -0.35 4.44 16 27 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 LS Contribution 258.83 15.07 3.90 3.90 Total: -1.00 -30.54 258.83 -6.26 -36.80 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.41 Total: 1.79 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.31 Total: -19.01 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.93 Total: -48.46 kcal Atomic # 14 Polarization: 29.36 SS G_CDS: -4.38 Total: 24.98 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.54 -6.26 -36.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082826035.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.030 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds